Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC016252.1-201ENST00000609721 474 ntBASIC3.53□□□□□ -1.84
FOXF1Q12946 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXF1Q12946 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXF1Q12946 AF001550.2-201ENST00000636643 217 ntBASIC3.53□□□□□ -1.84
FOXF1Q12946 IPO8P1-201ENST00000455509 3109 ntBASIC3.53□□□□□ -1.84
FOXF1Q12946 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.53□□□□□ -1.84
FOXF1Q12946 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
FOXF1Q12946 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXF1Q12946 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXF1Q12946 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXF1Q12946 AL356317.1-201ENST00000396110 1436 ntBASIC3.53□□□□□ -1.85
FOXF1Q12946 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
FOXF1Q12946 UBE3AP2-201ENST00000429033 2259 ntBASIC3.53□□□□□ -1.85
FOXF1Q12946 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
FOXF1Q12946 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
FOXF1Q12946 RNA5SP322-201ENST00000363617 119 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
FOXF1Q12946 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXF1Q12946 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXF1Q12946 RPS29P7-201ENST00000439662 171 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXF1Q12946 MORF4L1P4-201ENST00000450245 976 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 AC017007.3-201ENST00000479865 435 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXF1Q12946 MIR2114-201ENST00000516645 80 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 RNU6-352P-201ENST00000516908 107 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXF1Q12946 SS18L2P2-201ENST00000583960 235 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 AC015911.5-201ENST00000587076 451 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC005255.1-201ENST00000593748 216 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 VN1R85P-201ENST00000601587 426 ntBASIC3.52□□□□□ -1.85
FOXF1Q12946 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXF1Q12946 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXF1Q12946 AC083899.2-201ENST00000423285 1376 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 AC007390.2-201ENST00000606229 3803 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXF1Q12946 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXF1Q12946 RNU6-729P-201ENST00000384399 107 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 MIR1193-201ENST00000408109 78 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 MTND4LP21-201ENST00000415303 295 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXF1Q12946 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXF1Q12946 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXF1Q12946 Z74696.2-201ENST00000436514 498 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 ELOCP3-201ENST00000439303 348 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 MTND2P25-201ENST00000449028 610 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 OR9M1P-201ENST00000459641 921 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 RPS3AP6-201ENST00000484430 795 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXF1Q12946 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXF1Q12946 MTCYBP19-201ENST00000517463 1124 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXF1Q12946 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXF1Q12946 AC084824.1-201ENST00000550917 1005 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXF1Q12946 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXF1Q12946 AC015849.6-201ENST00000605454 474 ntBASIC3.51□□□□□ -1.85
FOXF1Q12946 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXF1Q12946 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXF1Q12946 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXF1Q12946 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXF1Q12946 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXF1Q12946 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXF1Q12946 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXF1Q12946 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXF1Q12946 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXF1Q12946 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXF1Q12946 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
FOXF1Q12946 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXF1Q12946 RNU6-213P-201ENST00000384051 104 ntBASIC3.5□□□□□ -1.85
FOXF1Q12946 MIR199A2-201ENST00000385289 110 ntBASIC3.5□□□□□ -1.85
FOXF1Q12946 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXF1Q12946 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXF1Q12946 RPL7P28-201ENST00000437739 740 ntBASIC3.5□□□□□ -1.85
FOXF1Q12946 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXF1Q12946 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXF1Q12946 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXF1Q12946 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXF1Q12946 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXF1Q12946 RNU6-943P-201ENST00000516960 98 ntBASIC3.5□□□□□ -1.85
FOXF1Q12946 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms