Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.99□□□□□ -1.77
CXCL12P48061 AL139089.1-201ENST00000620372 975 ntBASIC3.99□□□□□ -1.77
CXCL12P48061 U6.105-201ENST00000637379 88 ntBASIC3.99□□□□□ -1.77
CXCL12P48061 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.99□□□□□ -1.77
CXCL12P48061 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
CXCL12P48061 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.99□□□□□ -1.77
CXCL12P48061 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CXCL12P48061 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CXCL12P48061 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CXCL12P48061 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 AL022393.1-201ENST00000625142 1677 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 EOGT-210ENST00000615922 1931 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.98□□□□□ -1.77
CXCL12P48061 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC3.98□□□□□ -1.77
CXCL12P48061 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.98□□□□□ -1.77
CXCL12P48061 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.98□□□□□ -1.77
CXCL12P48061 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 RN7SL293P-201ENST00000481765 281 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC106707.2-201ENST00000484182 374 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 HMGB1P19-201ENST00000517578 577 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.98□□□□□ -1.77
CXCL12P48061 YPEL5P3-201ENST00000547227 352 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 GTF2IP22-201ENST00000554443 182 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 RPL21P12-201ENST00000559810 515 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 MIR5195-201ENST00000583555 115 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 AC008759.1-201ENST00000589783 983 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC010615.3-201ENST00000597319 394 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 ELOCP35-201ENST00000604289 336 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 QTRT1P1-201ENST00000604344 1078 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 SNORA35B-201ENST00000607417 129 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC096586.2-201ENST00000610260 441 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.98□□□□□ -1.77
CXCL12P48061 AC018816.2-201ENST00000621460 353 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 AF001550.2-201ENST00000636643 217 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 MAPK10-372ENST00000641954 3413 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 AL731532.2-201ENST00000623542 1953 ntBASIC3.98□□□□□ -1.77
CXCL12P48061 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CXCL12P48061 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CXCL12P48061 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
CXCL12P48061 MTND4LP21-201ENST00000415303 295 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 OR4F13P-201ENST00000428478 931 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.97□□□□□ -1.77
CXCL12P48061 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.97□□□□□ -1.77
CXCL12P48061 FABP3P2-201ENST00000453169 399 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.97□□□□□ -1.77
CXCL12P48061 AL133162.1-201ENST00000463228 453 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 AC112206.1-201ENST00000468416 477 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.97□□□□□ -1.77
CXCL12P48061 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.97□□□□□ -1.77
CXCL12P48061 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC3.97□□□□□ -1.77
CXCL12P48061 AC104619.4-201ENST00000510773 249 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 RN7SKP46-201ENST00000515942 234 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.97□□□□□ -1.77
CXCL12P48061 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.97□□□□□ -1.77
CXCL12P48061 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.97□□□□□ -1.77
CXCL12P48061 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.97□□□□□ -1.77
CXCL12P48061 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.97□□□□□ -1.77
CXCL12P48061 VN1R92P-201ENST00000598511 928 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 VN1R81P-201ENST00000602085 372 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 BNIP3P11-201ENST00000603878 563 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 AL442067.2-201ENST00000614033 363 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 MIR7702-201ENST00000621931 59 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 AP003499.2-201ENST00000624100 483 ntBASIC3.97□□□□□ -1.77
CXCL12P48061 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CXCL12P48061 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
CXCL12P48061 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CXCL12P48061 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.96□□□□□ -1.77
CXCL12P48061 AC092111.2-201ENST00000611627 1414 ntBASIC3.96□□□□□ -1.77
CXCL12P48061 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.96□□□□□ -1.78
CXCL12P48061 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.96□□□□□ -1.78
CXCL12P48061 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
CXCL12P48061 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
CXCL12P48061 DDX18P3-201ENST00000404856 2007 ntBASIC3.96□□□□□ -1.78
CXCL12P48061 RNA5SP399-201ENST00000364003 117 ntBASIC3.96□□□□□ -1.78
CXCL12P48061 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CXCL12P48061 SNORD3H-201ENST00000384486 214 ntBASIC3.96□□□□□ -1.78
CXCL12P48061 MIR634-201ENST00000385208 97 ntBASIC3.96□□□□□ -1.78
CXCL12P48061 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.96□□□□□ -1.78
CXCL12P48061 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.96□□□□□ -1.78
CXCL12P48061 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.96□□□□□ -1.78
CXCL12P48061 HIGD1AP4-201ENST00000430194 280 ntBASIC3.96□□□□□ -1.78
CXCL12P48061 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms