Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 AC006960.3-201ENST00000561845 705 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AC079171.1-201ENST00000568788 914 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC133552.5-201ENST00000604266 540 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AL033523.1-201ENST00000605153 153 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 CR392039.4-201ENST00000624968 501 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
BRCA1P38398 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.65□□□□□ -1.66
BRCA1P38398 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
BRCA1P38398 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.65□□□□□ -1.66
BRCA1P38398 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.65□□□□□ -1.66
BRCA1P38398 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
BRCA1P38398 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
BRCA1P38398 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
BRCA1P38398 AC067945.1-201ENST00000342609 618 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 SNORD96B-201ENST00000386148 79 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
BRCA1P38398 RN7SKP97-201ENST00000410966 333 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 AC138938.1-201ENST00000515431 782 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.65□□□□□ -1.66
BRCA1P38398 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.65□□□□□ -1.66
BRCA1P38398 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.65□□□□□ -1.66
BRCA1P38398 AC116312.1-201ENST00000606841 314 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 OR51C1P-201ENST00000608504 942 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 AC023509.5-201ENST00000617434 807 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 AC241377.1-201ENST00000619797 406 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 AC005086.4-201ENST00000623065 213 ntBASIC4.65□□□□□ -1.66
BRCA1P38398 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
BRCA1P38398 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
BRCA1P38398 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.65□□□□□ -1.67
BRCA1P38398 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.65□□□□□ -1.67
BRCA1P38398 AC004656.1-201ENST00000568479 4951 ntBASIC4.65□□□□□ -1.67
BRCA1P38398 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.65□□□□□ -1.67
BRCA1P38398 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.65□□□□□ -1.67
BRCA1P38398 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.64□□□□□ -1.67
BRCA1P38398 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 RNA5SP50-201ENST00000363731 107 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 HSFY4P-201ENST00000415994 1181 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.64□□□□□ -1.67
BRCA1P38398 RSL24D1P3-201ENST00000449255 495 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 BTF3P5-201ENST00000457252 467 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.64□□□□□ -1.67
BRCA1P38398 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.64□□□□□ -1.67
BRCA1P38398 AC084759.1-201ENST00000561168 290 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 AL354976.1-201ENST00000613843 387 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.64□□□□□ -1.67
BRCA1P38398 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.64□□□□□ -1.67
BRCA1P38398 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.64□□□□□ -1.67
BRCA1P38398 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.64□□□□□ -1.67
BRCA1P38398 RPL23AP57-201ENST00000332361 466 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 RNU4-35P-201ENST00000362588 141 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 AC234772.1-201ENST00000377927 937 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.64□□□□□ -1.67
BRCA1P38398 NPM1P48-201ENST00000436002 853 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 RPL23AP89-201ENST00000439324 255 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 AL445433.1-201ENST00000457507 257 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 RN7SL807P-201ENST00000470923 297 ntBASIC4.64□□□□□ -1.67
BRCA1P38398 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.64□□□□□ -1.67
BRCA1P38398 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
BRCA1P38398 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
BRCA1P38398 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
BRCA1P38398 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
BRCA1P38398 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
BRCA1P38398 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
BRCA1P38398 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
BRCA1P38398 VN1R51P-201ENST00000411675 945 ntBASIC4.63□□□□□ -1.67
BRCA1P38398 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.63□□□□□ -1.67
BRCA1P38398 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.63□□□□□ -1.67
BRCA1P38398 RPS26P2-201ENST00000440331 348 ntBASIC4.63□□□□□ -1.67
BRCA1P38398 RNU7-157P-201ENST00000459600 66 ntBASIC4.63□□□□□ -1.67
BRCA1P38398 AC108022.1-201ENST00000493466 478 ntBASIC4.63□□□□□ -1.67
BRCA1P38398 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.63□□□□□ -1.67
BRCA1P38398 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.63□□□□□ -1.67
BRCA1P38398 AC008011.1-201ENST00000545989 227 ntBASIC4.63□□□□□ -1.67
BRCA1P38398 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.63□□□□□ -1.67
BRCA1P38398 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.63□□□□□ -1.67
BRCA1P38398 AC007599.1-201ENST00000568688 1174 ntBASIC4.63□□□□□ -1.67
BRCA1P38398 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.63□□□□□ -1.67
BRCA1P38398 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
BRCA1P38398 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
BRCA1P38398 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.63□□□□□ -1.67
BRCA1P38398 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
BRCA1P38398 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.63□□□□□ -1.67
BRCA1P38398 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.63□□□□□ -1.67
BRCA1P38398 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
BRCA1P38398 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
BRCA1P38398 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
BRCA1P38398 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms