Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MAPK10-373ENST00000641983 6772 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC114546.3-201ENST00000623582 1734 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 MT-TP-201ENST00000387461 68 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL035696.2-201ENST00000407941 709 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 SNORA3C-201ENST00000408792 125 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 RPL23AP26-201ENST00000412728 464 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 FTH1P6-201ENST00000430768 320 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC092013.1-201ENST00000438795 332 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 MTND2P25-201ENST00000449028 610 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 RAD23BP3-201ENST00000454157 1152 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 FTH1P2-201ENST00000466086 412 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 UQCRHP4-201ENST00000471686 272 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 METTL15P1-201ENST00000481421 1045 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC105137.1-201ENST00000484355 562 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 RN7SL691P-201ENST00000494487 301 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC068305.1-201ENST00000497406 726 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 SNORD116-26-201ENST00000516006 96 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 RNA5SP73-201ENST00000516744 108 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 OR7E10P-201ENST00000526420 991 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 TVP23BP1-201ENST00000557500 617 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC079171.1-201ENST00000568788 914 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 RPL23AP87-202ENST00000573039 466 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC022655.2-201ENST00000577280 318 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC015911.5-201ENST00000587076 451 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC068020.1-201ENST00000594215 661 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC019131.2-201ENST00000609071 870 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL773545.4-201ENST00000637262 310 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AL513478.4-201ENST00000641636 310 ntBASIC3.13□□□□□ -1.91
HLA-DMBP28068 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HLA-DMBP28068 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HLA-DMBP28068 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC005261.4-201ENST00000600047 1385 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC009951.1-201ENST00000623674 2614 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 Y_RNA.62-201ENST00000362840 99 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DMBP28068 RNU6-225P-201ENST00000384613 103 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AL356967.1-201ENST00000406305 431 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 AMZ2P2-201ENST00000406819 1057 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 RPL7P53-201ENST00000421245 739 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 RPL23AP38-201ENST00000423801 469 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 MTCO1P54-201ENST00000430139 712 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 RPL5P32-201ENST00000454085 879 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 LARP7P4-201ENST00000481075 878 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 HAUS1P1-201ENST00000505275 832 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 USP9YP5-201ENST00000511770 630 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 FTH1P9-201ENST00000513251 355 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms