Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC6.05□□□□□ -1.44
HMGB1P09429 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
HMGB1P09429 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC6.05□□□□□ -1.44
HMGB1P09429 SNORA2.3-201ENST00000383920 135 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 RNU6-339P-201ENST00000384310 107 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 DUTP5-201ENST00000406790 469 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 U3.32-201ENST00000408116 212 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
HMGB1P09429 RNU2-28P-201ENST00000410457 189 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 OR8G2P-201ENST00000412796 908 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 LAMTOR3P1-201ENST00000428620 370 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 MTCO1P54-201ENST00000430139 712 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 KCTD10P1-201ENST00000434203 625 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC6.05□□□□□ -1.44
HMGB1P09429 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC6.05□□□□□ -1.44
HMGB1P09429 KNOP1P3-201ENST00000446933 426 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.05□□□□□ -1.44
HMGB1P09429 MTATP6P14-201ENST00000455189 673 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AC009127.1-201ENST00000467090 155 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 COPS8P2-201ENST00000473228 627 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AC022795.1-201ENST00000473808 480 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC6.05□□□□□ -1.44
HMGB1P09429 RPS4XP1-201ENST00000482189 787 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.05□□□□□ -1.44
HMGB1P09429 RNA5SP309-201ENST00000516670 106 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AC091163.3-201ENST00000518269 1144 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 IGHV3-32-201ENST00000519182 355 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.05□□□□□ -1.44
HMGB1P09429 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC6.05□□□□□ -1.44
HMGB1P09429 AC090502.2-201ENST00000549267 280 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 CBX3P5-201ENST00000552017 521 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC6.05□□□□□ -1.44
HMGB1P09429 MIR4472-2-201ENST00000582069 67 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AL669831.4-202ENST00000590817 238 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AC009237.15-201ENST00000610252 501 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 AC126915.2-201ENST00000610957 190 ntBASIC6.05□□□□□ -1.44
HMGB1P09429 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC6.05□□□□□ -1.44
HMGB1P09429 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
HMGB1P09429 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HMGB1P09429 IQCB2P-201ENST00000401788 1633 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 SCARNA15-201ENST00000607520 4325 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC090337.1-201ENST00000579651 2074 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HMGB1P09429 RN7SKP16-201ENST00000410180 299 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 RN7SKP126-201ENST00000411143 300 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
HMGB1P09429 SDCBPP2-201ENST00000424643 885 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 HIGD1AP12-201ENST00000427832 281 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC012497.1-201ENST00000429392 575 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 VDAC1P6-201ENST00000430062 855 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC6.04□□□□□ -1.44
HMGB1P09429 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.04□□□□□ -1.44
HMGB1P09429 AC004022.1-201ENST00000447766 1066 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 MTCO1P48-201ENST00000448024 1096 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC079776.3-201ENST00000450665 370 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 PLGLA-201ENST00000465668 449 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 PRELID3BP6-201ENST00000503839 571 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC096571.1-202ENST00000506634 735 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 MTCO1P30-201ENST00000515244 580 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC6.04□□□□□ -1.44
HMGB1P09429 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.04□□□□□ -1.44
HMGB1P09429 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.04□□□□□ -1.44
HMGB1P09429 AP004242.1-201ENST00000533701 349 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC6.04□□□□□ -1.44
HMGB1P09429 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HMGB1P09429 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.04□□□□□ -1.44
HMGB1P09429 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC6.04□□□□□ -1.44
HMGB1P09429 MIR3936-201ENST00000584304 110 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC107982.3-201ENST00000584957 985 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AL139022.2-201ENST00000606934 443 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC6.04□□□□□ -1.44
HMGB1P09429 AC073968.1-201ENST00000618594 637 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC099494.2-201ENST00000623371 978 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 AC104985.3-201ENST00000623479 597 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC6.04□□□□□ -1.44
HMGB1P09429 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HMGB1P09429 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HMGB1P09429 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC6.04□□□□□ -1.44
HMGB1P09429 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.04□□□□□ -1.44
HMGB1P09429 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
HMGB1P09429 AC114947.2-201ENST00000565748 2125 ntBASIC6.04□□□□□ -1.44
HMGB1P09429 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
HMGB1P09429 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC6.03□□□□□ -1.44
HMGB1P09429 AC012020.1-201ENST00000624541 1728 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HMGB1P09429 SNORD82-201ENST00000365530 70 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 SNORD65.1-201ENST00000390889 71 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 RPL23AP47-201ENST00000408017 460 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 RNA5SP56-201ENST00000410277 118 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms