Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.28□□□□□ -1.72
SDC3O75056 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
SDC3O75056 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.28□□□□□ -1.72
SDC3O75056 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.73
SDC3O75056 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
SDC3O75056 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SDC3O75056 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
SDC3O75056 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.27□□□□□ -1.73
SDC3O75056 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SDC3O75056 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.27□□□□□ -1.73
SDC3O75056 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
SDC3O75056 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
SDC3O75056 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SDC3O75056 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
SDC3O75056 RPL32P23-201ENST00000397237 405 ntBASIC4.27□□□□□ -1.73
SDC3O75056 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.27□□□□□ -1.73
SDC3O75056 LAP3P1-201ENST00000403648 294 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AL592291.1-201ENST00000403830 352 ntBASIC4.27□□□□□ -1.73
SDC3O75056 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
SDC3O75056 RPL31P52-201ENST00000407532 367 ntBASIC4.27□□□□□ -1.73
SDC3O75056 RNA5SP36-201ENST00000410197 133 ntBASIC4.27□□□□□ -1.73
SDC3O75056 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.27□□□□□ -1.73
SDC3O75056 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.27□□□□□ -1.73
SDC3O75056 MTND4P11-201ENST00000417020 1058 ntBASIC4.27□□□□□ -1.73
SDC3O75056 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.27□□□□□ -1.73
SDC3O75056 NMNAT1P2-201ENST00000435192 860 ntBASIC4.27□□□□□ -1.73
SDC3O75056 HSFY6P-201ENST00000445573 403 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.27□□□□□ -1.73
SDC3O75056 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.27□□□□□ -1.73
SDC3O75056 SNORA84-201ENST00000459229 133 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.27□□□□□ -1.73
SDC3O75056 RNA5SP519-201ENST00000516480 119 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.27□□□□□ -1.73
SDC3O75056 MED28P5-201ENST00000528254 438 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.27□□□□□ -1.73
SDC3O75056 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.27□□□□□ -1.73
SDC3O75056 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
SDC3O75056 AC027176.2-201ENST00000559166 746 ntBASIC4.27□□□□□ -1.73
SDC3O75056 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.27□□□□□ -1.73
SDC3O75056 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.27□□□□□ -1.73
SDC3O75056 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.27□□□□□ -1.73
SDC3O75056 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.27□□□□□ -1.73
SDC3O75056 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.27□□□□□ -1.73
SDC3O75056 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.27□□□□□ -1.73
SDC3O75056 AC091178.1-203ENST00000584586 279 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.27□□□□□ -1.73
SDC3O75056 AC023762.1-201ENST00000603280 584 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AC025175.1-201ENST00000606482 759 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AC017076.1-201ENST00000607613 578 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AL355816.1-201ENST00000607951 118 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AL162574.2-201ENST00000614618 657 ntBASIC4.27□□□□□ -1.73
SDC3O75056 MIR8059-201ENST00000620427 81 ntBASIC4.27□□□□□ -1.73
SDC3O75056 AC067931.1-201ENST00000624190 671 ntBASIC4.27□□□□□ -1.73
SDC3O75056 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.27□□□□□ -1.73
SDC3O75056 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SDC3O75056 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SDC3O75056 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.27□□□□□ -1.73
SDC3O75056 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDC3O75056 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDC3O75056 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDC3O75056 AC087190.4-201ENST00000574616 8334 ntBASIC4.26□□□□□ -1.73
SDC3O75056 OR56B2P-201ENST00000317102 954 ntBASIC4.26□□□□□ -1.73
SDC3O75056 RN7SKP280-201ENST00000364196 304 ntBASIC4.26□□□□□ -1.73
SDC3O75056 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SDC3O75056 RNU1-63P-201ENST00000383902 164 ntBASIC4.26□□□□□ -1.73
SDC3O75056 AC097374.1-203ENST00000400783 485 ntBASIC4.26□□□□□ -1.73
SDC3O75056 RPL36AP36-201ENST00000418616 301 ntBASIC4.26□□□□□ -1.73
SDC3O75056 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC3O75056 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.26□□□□□ -1.73
SDC3O75056 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.26□□□□□ -1.73
SDC3O75056 RPS26P2-201ENST00000440331 348 ntBASIC4.26□□□□□ -1.73
SDC3O75056 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SDC3O75056 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 FGF7P3-201ENST00000454645 303 ntBASIC4.26□□□□□ -1.73
SDC3O75056 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.26□□□□□ -1.73
SDC3O75056 RPL35AP15-201ENST00000468042 339 ntBASIC4.26□□□□□ -1.73
SDC3O75056 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
SDC3O75056 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
SDC3O75056 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
SDC3O75056 RN7SL691P-201ENST00000494487 301 ntBASIC4.26□□□□□ -1.73
SDC3O75056 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 COL6A4P2-205ENST00000509855 506 ntBASIC4.26□□□□□ -1.73
SDC3O75056 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.26□□□□□ -1.73
SDC3O75056 OR8K2P-201ENST00000524645 927 ntBASIC4.26□□□□□ -1.73
SDC3O75056 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.26□□□□□ -1.73
SDC3O75056 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SDC3O75056 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.26□□□□□ -1.73
SDC3O75056 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.26□□□□□ -1.73
SDC3O75056 MIR4716-201ENST00000579628 84 ntBASIC4.26□□□□□ -1.73
SDC3O75056 IMMP1LP1-201ENST00000605170 488 ntBASIC4.26□□□□□ -1.73
SDC3O75056 AC004775.1-201ENST00000607389 753 ntBASIC4.26□□□□□ -1.73
SDC3O75056 MIR92B-201ENST00000607575 96 ntBASIC4.26□□□□□ -1.73
SDC3O75056 AC099676.1-201ENST00000608886 657 ntBASIC4.26□□□□□ -1.73
SDC3O75056 MIR7973-1-201ENST00000614683 76 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms