Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC8.08□□□□□ -1.12
SHROOM4Q9ULL8 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
SHROOM4Q9ULL8 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
SHROOM4Q9ULL8 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
SHROOM4Q9ULL8 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC8.08□□□□□ -1.12
SHROOM4Q9ULL8 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
SHROOM4Q9ULL8 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 MIR634-201ENST00000385208 97 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 AC019070.1-201ENST00000415008 1024 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 MTND2P2-201ENST00000434633 945 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 AF213884.1-201ENST00000488102 463 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 AC119751.5-201ENST00000514077 770 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 HIGD1AP18-201ENST00000520730 278 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 RPL21P12-201ENST00000559810 515 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 AC096553.1-201ENST00000605169 829 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 AC073346.2-201ENST00000624724 2058 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 AC006971.1-201ENST00000407916 4486 ntBASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
SHROOM4Q9ULL8 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AL353692.2-201ENST00000407054 335 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 CYCSP10-201ENST00000417973 294 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 NANOGP10-201ENST00000453325 895 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 MTND3P24-201ENST00000506306 329 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AC107982.3-201ENST00000584957 985 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AC004775.1-201ENST00000607389 753 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 MIR8069-1-201ENST00000616627 86 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 MIR8069-2-201ENST00000621412 86 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 CASC19-261ENST00000641853 1638 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 TAF9BP2-201ENST00000400856 499 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 PTP4A1P3-201ENST00000433661 420 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 RPL7P49-201ENST00000471402 708 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 snoU109.6-201ENST00000516831 118 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AC138832.1-201ENST00000522871 556 ntBASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
SHROOM4Q9ULL8 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 CTSL3P-202ENST00000412179 788 ntBASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC105402.1-201ENST00000413336 545 ntBASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC114814.2-201ENST00000419195 485 ntBASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 FTH1P25-201ENST00000447665 469 ntBASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC008628.1-201ENST00000508663 265 ntBASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 DUXAP2-201ENST00000519198 589 ntBASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 AC007423.1-201ENST00000605009 627 ntBASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
SHROOM4Q9ULL8 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 AC006042.3-201ENST00000454684 1469 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 RNA5SP307-201ENST00000362863 116 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 RNA5SP175-201ENST00000364275 119 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 RNU6-225P-201ENST00000384613 103 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 RNU11-4P-201ENST00000391149 133 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 AL121882.1-201ENST00000422893 417 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 TMX2P1-201ENST00000436507 708 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 AP000936.3-201ENST00000438127 255 ntBASIC8.04□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms