Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC233702.9-201ENST00000581528 203 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RN7SL600P-201ENST00000581811 299 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AC006116.5-201ENST00000591936 559 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AL356094.1-201ENST00000624663 1212 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 RN7SKP224-201ENST00000364140 325 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL512430.2-201ENST00000406786 339 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 MIR1179-201ENST00000408703 91 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 RN7SKP199-201ENST00000410325 305 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 LINC01881-201ENST00000416103 412 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 PDSS1P1-201ENST00000422953 1114 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 COX6CP15-201ENST00000426313 211 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 NPM1P24-201ENST00000428039 894 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC073508.1-201ENST00000428866 656 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL031663.1-201ENST00000437445 219 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL450263.2-201ENST00000439400 589 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 MED6P1-201ENST00000439659 713 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 RNA5SP246-201ENST00000458909 119 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 RPL7P19-201ENST00000469948 618 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC010468.3-201ENST00000508225 458 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC025768.1-201ENST00000510057 267 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC022655.2-201ENST00000577280 318 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 MIR4697-201ENST00000582977 78 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 ZNF92P3-201ENST00000596594 954 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC243654.2-201ENST00000612843 443 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 FRG1DP-201ENST00000635586 771 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC017104.4-201ENST00000636283 1592 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 AC021242.1-201ENST00000507315 2035 ntBASIC4.26□□□□□ -1.73
LHX3Q9UBR4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
LHX3Q9UBR4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AL121657.1-201ENST00000327215 531 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 RNU1-94P-201ENST00000362627 173 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 RN7SKP33-201ENST00000410942 340 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 USP9YP19-201ENST00000412165 485 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 GSTM3P2-201ENST00000412746 530 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 RPS23P10-201ENST00000416185 486 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 MTND4P11-201ENST00000417020 1058 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AC009965.2-201ENST00000425328 970 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 RPL12P46-201ENST00000436610 195 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 NPM1P29-201ENST00000483112 803 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms