Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AL391684.1-202ENST00000641293 1636 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AL022393.1-201ENST00000625142 1677 ntBASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC3Q9BQI4 AC083899.2-201ENST00000423285 1376 ntBASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 AL672167.1-205ENST00000641112 3080 ntBASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 AL355852.1-201ENST00000454081 1771 ntBASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 SALL4P2-201ENST00000423288 2910 ntBASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC3Q9BQI4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 RNU6-207P-201ENST00000384137 107 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 RNU6-1000P-201ENST00000391066 106 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AL592291.1-201ENST00000403830 352 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AL354692.1-201ENST00000423044 315 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 RPS27AP12-201ENST00000429552 465 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC092447.2-201ENST00000435487 669 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 NUTF2P3-201ENST00000448540 384 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 NAMPTP2-201ENST00000505629 1115 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC026402.1-201ENST00000513642 170 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 MTCO1P35-201ENST00000515270 228 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 SNORA31.9-201ENST00000516429 84 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC007224.1-201ENST00000564410 144 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 IPO5P1-202ENST00000600039 287 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AP000843.1-201ENST00000624880 701 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC132825.7-201ENST00000638744 335 ntBASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC3Q9BQI4 DDX18P3-201ENST00000404856 2007 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 MIR142-201ENST00000384835 87 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 RN7SKP263-201ENST00000411194 309 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 MTND2P15-201ENST00000418575 892 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 RPL36AP10-201ENST00000421785 322 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AP001324.1-201ENST00000428553 399 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 RPS24P8-201ENST00000431490 402 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 TRBV26OR9-2-201ENST00000432077 293 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 ACTR3P2-201ENST00000439585 1257 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 PHBP16-201ENST00000446318 950 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AL935212.3-201ENST00000450729 284 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 RPL7P32-201ENST00000457119 744 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 RN7SL98P-201ENST00000462271 300 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AL591473.1-201ENST00000464297 313 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms