Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 IRF5P1-201ENST00000504852 2164 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 INTS6P1-201ENST00000504674 2530 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AL355852.1-201ENST00000454081 1771 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC103591.2-201ENST00000265259 766 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 RNA5SP191-201ENST00000362585 102 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 RN7SKP95-201ENST00000362860 303 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 ZNF602P-201ENST00000405929 924 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 NCSTNP1-201ENST00000406229 144 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 BTF3P8-201ENST00000414577 526 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 COX6B1P1-201ENST00000415962 213 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC114814.2-201ENST00000419195 485 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AL590609.2-201ENST00000421430 368 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 C1DP1-201ENST00000426049 402 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 DYNLL1P7-201ENST00000429273 258 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC112498.1-201ENST00000444401 332 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AL929288.2-201ENST00000446368 407 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 RNU6-1218P-201ENST00000458990 108 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 RPL7AP28-201ENST00000464513 571 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 UBA52P3-201ENST00000491303 382 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC104108.1-201ENST00000509930 412 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC104417.1-201ENST00000523974 751 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 NDUFS5P6-201ENST00000529136 295 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 RN7SL802P-201ENST00000577858 299 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 MIR5699-201ENST00000578903 90 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC022726.1-201ENST00000587475 207 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC006116.5-201ENST00000591936 559 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC005084.1-201ENST00000605160 304 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC024060.1-201ENST00000607052 494 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 FAM27B-201ENST00000610601 213 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 SNX18P1Y-201ENST00000616231 511 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 AL133243.3-201ENST00000617415 3004 ntBASIC4.04□□□□□ -1.76
NKX3-1Q99801 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
NKX3-1Q99801 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
NKX3-1Q99801 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC111188.2-201ENST00000529697 1387 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
NKX3-1Q99801 RNU6-304P-201ENST00000364855 107 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 MIR92A2-201ENST00000385299 75 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL590762.2-201ENST00000395798 571 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL109941.1-201ENST00000401925 229 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AP002530.1-201ENST00000405705 684 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 OR51B3P-201ENST00000412287 913 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC099336.2-201ENST00000422457 254 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 NANOGP5-201ENST00000424456 877 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 GTF2IP3-201ENST00000433887 494 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL353597.2-202ENST00000434901 373 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 PTGES3P1-201ENST00000439531 483 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 ELOCP10-201ENST00000440624 327 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC009263.1-201ENST00000441193 1239 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL358794.1-201ENST00000445689 381 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 PTMAP3-201ENST00000447474 330 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 MTND2P8-201ENST00000450555 1025 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 RPL7P32-201ENST00000457119 744 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC099560.2-201ENST00000457554 255 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AL161747.1-201ENST00000480068 358 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 165.6 ms