Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CBX3P2-202ENST00000583365 535 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC005242.1-201ENST00000585658 438 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC025946.2-201ENST00000603398 234 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 MIR7973-1-201ENST00000614683 76 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC007546.1-201ENST00000619452 559 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC015726.3-201ENST00000624501 418 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC116563.2-201ENST00000624751 535 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 SNORD115-48-201ENST00000364764 76 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 MIR1911-201ENST00000410783 80 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC010385.1-201ENST00000412374 256 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC011933.1-201ENST00000413334 321 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 MTND4P11-201ENST00000417020 1058 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 MTND4P24-201ENST00000424002 397 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC009965.2-201ENST00000425328 970 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 ZNF965P-201ENST00000432501 817 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 RPS15AP29-201ENST00000445539 400 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 RPL34P26-201ENST00000445636 354 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC239809.1-201ENST00000450470 217 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC116533.1-201ENST00000459748 321 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 RPL35P6-201ENST00000490024 372 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 RN7SL691P-201ENST00000494487 301 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 AL592156.1-201ENST00000508758 304 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 OR1AB1P-201ENST00000585564 761 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AL096803.3-201ENST00000609032 532 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC243654.2-201ENST00000612843 443 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC025016.1-201ENST00000616746 682 ntBASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS35Q96QK1 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS35Q96QK1 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 SNORD51.1-201ENST00000365405 77 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 P2RY10P2-201ENST00000416730 913 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 AL157831.1-201ENST00000426134 473 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 MTND4LP7-201ENST00000431728 294 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 RPS3AP54-201ENST00000435535 734 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 CBX1P4-201ENST00000439415 457 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 AL353748.1-201ENST00000440753 474 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 RNA5SP73-201ENST00000516744 108 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 AC090819.1-201ENST00000523800 1111 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 PSMB7P1-201ENST00000556349 514 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 AL109741.3-201ENST00000561748 592 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 AL354984.3-201ENST00000604803 325 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 FAM27D1-201ENST00000612308 341 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 AL138721.1-201ENST00000616756 179 ntBASIC4.28□□□□□ -1.72
VPS35Q96QK1 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
VPS35Q96QK1 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms