Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC009117.1-201ENST00000563948 554 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC006270.2-201ENST00000578523 652 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 MIR4737-201ENST00000583979 81 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 RN7SL722P-201ENST00000617780 284 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 RN7SL565P-201ENST00000618246 284 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL391684.1-202ENST00000641293 1636 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC119744.1-201ENST00000454746 1715 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 MAPK10-372ENST00000641954 3413 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC067945.1-201ENST00000342609 618 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP22-201ENST00000365393 109 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 SNORA51.12-201ENST00000384448 134 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 UBE2V1P11-201ENST00000411559 285 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 LINC00993-201ENST00000420453 540 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC007559.1-201ENST00000428736 355 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 SKP1P3-201ENST00000429280 487 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC008072.1-201ENST00000434254 824 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL138878.2-201ENST00000440581 1241 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 RPL7P33-201ENST00000444159 742 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 SLC25A18P1-201ENST00000449385 454 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC008897.1-201ENST00000494006 347 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC105233.1-201ENST00000498840 781 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC008494.2-201ENST00000514544 370 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 RN7SKP277-201ENST00000516895 283 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 MIR3667-201ENST00000581025 74 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 MEMO1P5-201ENST00000604810 406 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL161616.1-201ENST00000611867 286 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL359535.1-201ENST00000612100 1087 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC025016.1-201ENST00000616746 682 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AL138721.1-201ENST00000616756 179 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 AC046144.1-201ENST00000478559 1853 ntBASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
ZNF540Q8NDQ6 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 MTCO1P24-201ENST00000515438 1558 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 KARSP3-201ENST00000571212 1504 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 RNU6-883P-201ENST00000384597 107 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AL590762.2-201ENST00000395798 571 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 VN1R8P-201ENST00000407739 893 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AL035696.2-201ENST00000407941 709 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AL590139.1-201ENST00000416267 400 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 RPL23AP25-201ENST00000430973 463 ntBASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
ZNF540Q8NDQ6 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms