Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.21□□□□□ -1.42
LIG3P49916 OR4A15-201ENST00000314706 1035 ntBASIC6.21□□□□□ -1.42
LIG3P49916 RN7SKP69-201ENST00000365390 305 ntBASIC6.21□□□□□ -1.42
LIG3P49916 RNU6-809P-201ENST00000384461 107 ntBASIC6.21□□□□□ -1.42
LIG3P49916 MTCO3P40-201ENST00000392516 676 ntBASIC6.21□□□□□ -1.42
LIG3P49916 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 AL121972.1-201ENST00000402023 252 ntBASIC6.21□□□□□ -1.42
LIG3P49916 GSTA9P-201ENST00000406231 611 ntBASIC6.21□□□□□ -1.42
LIG3P49916 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 AL139413.1-201ENST00000421309 217 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 AL513174.1-201ENST00000423182 629 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC6.21□□□□□ -1.42
LIG3P49916 AC115283.1-201ENST00000427353 400 ntBASIC6.21□□□□□ -1.42
LIG3P49916 BX890604.2-201ENST00000427883 474 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.21□□□□□ -1.42
LIG3P49916 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC6.21□□□□□ -1.42
LIG3P49916 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 USP12PX-201ENST00000432383 1057 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 AC110602.1-201ENST00000437414 318 ntBASIC6.21□□□□□ -1.42
LIG3P49916 OR3D1P-201ENST00000438288 955 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AC098614.3-201ENST00000438957 440 ntBASIC6.21□□□□□ -1.42
LIG3P49916 MED28P3-201ENST00000444288 531 ntBASIC6.21□□□□□ -1.42
LIG3P49916 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 MTCO1P48-201ENST00000448024 1096 ntBASIC6.21□□□□□ -1.42
LIG3P49916 PPIAP7-201ENST00000454070 489 ntBASIC6.21□□□□□ -1.42
LIG3P49916 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.21□□□□□ -1.42
LIG3P49916 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.21□□□□□ -1.42
LIG3P49916 ACTR3P3-201ENST00000480448 893 ntBASIC6.21□□□□□ -1.42
LIG3P49916 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 AC090958.1-201ENST00000511122 351 ntBASIC6.21□□□□□ -1.42
LIG3P49916 EIF3KP3-201ENST00000514461 639 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC6.21□□□□□ -1.42
LIG3P49916 AP000620.1-201ENST00000527147 504 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.21□□□□□ -1.42
LIG3P49916 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
LIG3P49916 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC6.21□□□□□ -1.42
LIG3P49916 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 AC009977.1-201ENST00000586015 570 ntBASIC6.21□□□□□ -1.42
LIG3P49916 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC6.21□□□□□ -1.42
LIG3P49916 AL133338.2-201ENST00000604292 736 ntBASIC6.21□□□□□ -1.42
LIG3P49916 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.21□□□□□ -1.42
LIG3P49916 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.21□□□□□ -1.42
LIG3P49916 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.21□□□□□ -1.42
LIG3P49916 RN7SL261P-201ENST00000613441 282 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AC104010.1-201ENST00000616889 150 ntBASIC6.21□□□□□ -1.42
LIG3P49916 FAM27E2-201ENST00000619668 403 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AL359880.1-201ENST00000621879 266 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AC116563.2-201ENST00000624751 535 ntBASIC6.21□□□□□ -1.42
LIG3P49916 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.21□□□□□ -1.42
LIG3P49916 LRRC77P-213ENST00000637727 880 ntBASIC6.21□□□□□ -1.42
LIG3P49916 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.21□□□□□ -1.42
LIG3P49916 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
LIG3P49916 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 AC006378.2-201ENST00000623178 2476 ntBASIC6.21□□□□□ -1.42
LIG3P49916 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
LIG3P49916 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
LIG3P49916 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 TRIM51GP-201ENST00000534741 1350 ntBASIC6.2□□□□□ -1.42
LIG3P49916 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 RBPJP2-201ENST00000618187 1444 ntBASIC6.2□□□□□ -1.42
LIG3P49916 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIG3P49916 COX6B1P3-201ENST00000312310 260 ntBASIC6.2□□□□□ -1.42
LIG3P49916 OR7E101P-201ENST00000400428 513 ntBASIC6.2□□□□□ -1.42
LIG3P49916 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.2□□□□□ -1.42
LIG3P49916 MIR320C1-201ENST00000408566 88 ntBASIC6.2□□□□□ -1.42
LIG3P49916 SNORA77.2-201ENST00000408571 112 ntBASIC6.2□□□□□ -1.42
LIG3P49916 HYKK-202ENST00000408962 847 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 METTL5-204ENST00000409340 472 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC6.2□□□□□ -1.42
LIG3P49916 RPL7P30-201ENST00000420888 709 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AC130360.1-201ENST00000425489 1117 ntBASIC6.2□□□□□ -1.42
LIG3P49916 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 AL731534.1-201ENST00000434711 269 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC6.2□□□□□ -1.42
LIG3P49916 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.2□□□□□ -1.42
LIG3P49916 ACTR3P2-201ENST00000439585 1257 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.2□□□□□ -1.42
LIG3P49916 AC097463.1-201ENST00000447288 481 ntBASIC6.2□□□□□ -1.42
LIG3P49916 RPL23AP15-201ENST00000450202 459 ntBASIC6.2□□□□□ -1.42
LIG3P49916 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC6.2□□□□□ -1.42
LIG3P49916 VDAC2P4-201ENST00000452925 711 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 192.6 ms