Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 XPOTP1-201ENST00000443317 2398 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC5.98□□□□□ -1.45
COL8A1P27658 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
COL8A1P27658 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 LGI1-211ENST00000630047 1751 ntTSL 2 BASIC5.98□□□□□ -1.45
COL8A1P27658 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 AC003985.2-201ENST00000562268 1669 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 AP001157.1-201ENST00000550837 2339 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
COL8A1P27658 MELK-211ENST00000545008 2236 ntTSL 2 BASIC5.98□□□□□ -1.45
COL8A1P27658 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
COL8A1P27658 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 OR51A10P-201ENST00000307165 937 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 SNORA75B-201ENST00000384053 137 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 Y_RNA.461-201ENST00000384263 103 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AL121972.1-201ENST00000402023 252 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 HMGN1P20-201ENST00000411849 300 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 VDAC1P9-201ENST00000412766 841 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AL451074.5-201ENST00000415894 435 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 ARL5AP1-201ENST00000418991 388 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 SKA2P1-201ENST00000425592 390 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.98□□□□□ -1.45
COL8A1P27658 RSL24D1P6-201ENST00000426934 401 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AC006548.1-201ENST00000427470 102 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC5.98□□□□□ -1.45
COL8A1P27658 AL590128.1-201ENST00000433407 286 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AC098831.1-201ENST00000440661 216 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 DYNLT3P2-201ENST00000442517 295 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 TMSB4XP3-201ENST00000445144 114 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 PRPS1P1-201ENST00000445305 876 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 COX4I1P2-201ENST00000447446 547 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 RN7SL379P-201ENST00000479912 293 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AC011005.2-201ENST00000487324 359 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 RN7SKP2-201ENST00000517003 319 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 RNU6-410P-201ENST00000517006 107 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 RNA5SP454-201ENST00000517231 127 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 SNORA81.3-201ENST00000517283 198 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC5.98□□□□□ -1.45
COL8A1P27658 AC007537.1-201ENST00000539347 327 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.98□□□□□ -1.45
COL8A1P27658 AP005119.1-201ENST00000580956 292 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.98□□□□□ -1.45
COL8A1P27658 AC098848.2-201ENST00000588023 330 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AC078899.3-201ENST00000599065 212 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC5.98□□□□□ -1.45
COL8A1P27658 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.98□□□□□ -1.45
COL8A1P27658 AC091953.5-201ENST00000622919 233 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL8A1P27658 AC026634.1-201ENST00000634369 198 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 AL669831.3-213ENST00000636676 183 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC5.98□□□□□ -1.45
COL8A1P27658 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 GTF2H2B-203ENST00000508065 1432 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 RNF6P1-201ENST00000444889 1784 ntBASIC5.98□□□□□ -1.45
COL8A1P27658 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 PAH-201ENST00000307000 2466 ntTSL 5 BASIC5.98□□□□□ -1.45
COL8A1P27658 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL8A1P27658 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC130360.2-201ENST00000533477 1556 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC5.97□□□□□ -1.45
COL8A1P27658 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.97□□□□□ -1.45
COL8A1P27658 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC233263.6-201ENST00000631132 1963 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
COL8A1P27658 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.97□□□□□ -1.45
COL8A1P27658 SNRPEP3-201ENST00000338402 276 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 Y_RNA.14-201ENST00000362415 103 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 Y_RNA.150-201ENST00000363562 102 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 RN7SKP107-201ENST00000364157 290 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 Y_RNA.270-201ENST00000364693 104 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 Y_RNA.380-201ENST00000365663 111 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
COL8A1P27658 RNU6-1081P-201ENST00000384537 107 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 RNU6-601P-201ENST00000384540 107 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 SNORA17A-201ENST00000391185 133 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms