Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNORA40.15-201ENST00000516884 107 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AC112191.2-201ENST00000522428 333 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC7.31□□□□□ -1.24
COL9A1P20849 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC7.31□□□□□ -1.24
COL9A1P20849 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC7.31□□□□□ -1.24
COL9A1P20849 AC068446.3-201ENST00000555285 382 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC7.31□□□□□ -1.24
COL9A1P20849 MIR4489-201ENST00000578869 62 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 MIR3941-201ENST00000582572 103 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 VN1R84P-201ENST00000593697 235 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AC009902.3-201ENST00000606235 2172 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 LDHA-225ENST00000625635 141 ntTSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
COL9A1P20849 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 PABPC1P7-201ENST00000413177 1513 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 IRAK4-201ENST00000431837 4147 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC7.31□□□□□ -1.24
COL9A1P20849 AL049555.1-201ENST00000562834 1933 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
COL9A1P20849 CDY19P-201ENST00000411668 1613 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
COL9A1P20849 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC7.3□□□□□ -1.24
COL9A1P20849 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 OR7E25P-202ENST00000641088 5937 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 Y_RNA.2-201ENST00000362330 96 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 RNU6-1287P-201ENST00000362914 107 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.3□□□□□ -1.24
COL9A1P20849 Y_RNA.506-201ENST00000384494 102 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 RNU6-1060P-201ENST00000384664 107 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 RPS27P18-201ENST00000431701 247 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 CYCSP24-201ENST00000445119 316 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC002486.2-201ENST00000447806 590 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AL121578.2-201ENST00000448797 447 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 RPL23AP15-201ENST00000450202 459 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 RN7SL552P-201ENST00000462094 276 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 RN7SL809P-201ENST00000482040 297 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC7.3□□□□□ -1.24
COL9A1P20849 RPS27AP18-201ENST00000515536 459 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 TRIM77BP-201ENST00000524985 1119 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC7.3□□□□□ -1.24
COL9A1P20849 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 AC040162.2-201ENST00000573092 157 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC011494.1-201ENST00000596454 237 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC7.3□□□□□ -1.24
COL9A1P20849 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC012669.1-201ENST00000603209 283 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC104763.2-201ENST00000604179 382 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC124916.2-201ENST00000604416 224 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC097381.3-201ENST00000608962 462 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC004241.2-201ENST00000614562 444 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AP005431.1-201ENST00000618479 319 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC005514.1-201ENST00000623521 208 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 AC245100.2-201ENST00000454544 1679 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 OR4D10-201ENST00000530162 2482 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
COL9A1P20849 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC7.3□□□□□ -1.24
COL9A1P20849 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.3□□□□□ -1.24
COL9A1P20849 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.3□□□□□ -1.24
COL9A1P20849 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC7.3□□□□□ -1.24
COL9A1P20849 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC7.3□□□□□ -1.24
COL9A1P20849 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL9A1P20849 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.3□□□□□ -1.24
COL9A1P20849 AC145138.1-201ENST00000512908 2851 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC008937.3-201ENST00000606813 1700 ntBASIC7.3□□□□□ -1.24
COL9A1P20849 AC138207.6-201ENST00000579164 1967 ntBASIC7.29□□□□□ -1.24
COL9A1P20849 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC7.29□□□□□ -1.24
COL9A1P20849 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms