Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
HMGB1P09429 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
HMGB1P09429 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 AL450345.1-202ENST00000605741 3881 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
HMGB1P09429 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
HMGB1P09429 AC017079.1-201ENST00000333650 415 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 U3.2-201ENST00000362981 210 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
HMGB1P09429 AL391361.1-201ENST00000405580 489 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGB1P09429 AL133384.1-201ENST00000412744 351 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AL139148.1-201ENST00000427122 680 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 BLOC1S2P1-201ENST00000428431 301 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGB1P09429 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGB1P09429 AL138799.3-201ENST00000438968 350 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 NPM1P49-201ENST00000448027 714 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 RPL5P32-201ENST00000454085 879 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.07□□□□□ -1.44
HMGB1P09429 AC245028.2-201ENST00000458673 253 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AC091180.1-201ENST00000462104 372 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.07□□□□□ -1.44
HMGB1P09429 AC006967.1-201ENST00000467608 589 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AC013828.1-201ENST00000481845 158 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGB1P09429 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
HMGB1P09429 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 AP003385.6-201ENST00000531603 374 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGB1P09429 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGB1P09429 FKBP1BP1-201ENST00000553366 325 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AL359219.2-201ENST00000555184 348 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 CFL2-206ENST00000556161 546 ntTSL 4 BASIC6.07□□□□□ -1.44
HMGB1P09429 NDUFB4P11-201ENST00000560510 395 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC6.07□□□□□ -1.44
HMGB1P09429 AC007225.2-201ENST00000562529 256 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 MIR3176-201ENST00000582210 90 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 SNRPGP15-201ENST00000600149 222 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC6.07□□□□□ -1.44
HMGB1P09429 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGB1P09429 AL121652.1-201ENST00000608851 448 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGB1P09429 BX005214.3-202ENST00000619809 325 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 AC026634.1-201ENST00000634369 198 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
HMGB1P09429 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.07□□□□□ -1.44
HMGB1P09429 AL157700.1-201ENST00000561973 1432 ntBASIC6.07□□□□□ -1.44
HMGB1P09429 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.06□□□□□ -1.44
HMGB1P09429 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC6.06□□□□□ -1.44
HMGB1P09429 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HMGB1P09429 RNU1-43P-201ENST00000365052 165 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 SNORA11.3-201ENST00000408471 128 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 RPL35AP24-201ENST00000413846 330 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.06□□□□□ -1.44
HMGB1P09429 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 RAC1P8-201ENST00000427086 527 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 GTF2IP3-201ENST00000433887 494 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HMGB1P09429 TCEA1P3-201ENST00000443005 880 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.06□□□□□ -1.44
HMGB1P09429 RN7SL443P-201ENST00000464331 290 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 AC078918.1-201ENST00000498515 228 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HMGB1P09429 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HMGB1P09429 AC010374.2-201ENST00000512933 535 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 RNU4ATAC10P-201ENST00000516967 122 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.06□□□□□ -1.44
HMGB1P09429 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 AP001189.2-201ENST00000527320 189 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC6.06□□□□□ -1.44
HMGB1P09429 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC6.06□□□□□ -1.44
HMGB1P09429 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.06□□□□□ -1.44
HMGB1P09429 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC6.06□□□□□ -1.44
HMGB1P09429 VN1R79P-201ENST00000593540 513 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 AC068790.7-201ENST00000602347 528 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 SNORA11.6-201ENST00000619030 128 ntBASIC6.06□□□□□ -1.44
HMGB1P09429 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC6.06□□□□□ -1.44
HMGB1P09429 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HMGB1P09429 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HMGB1P09429 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
HMGB1P09429 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HMGB1P09429 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HMGB1P09429 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms