Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 GTF2IP22-201ENST00000554443 182 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC090515.3-201ENST00000560431 315 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 SULT1C2P1-202ENST00000562418 459 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 MIR4505-201ENST00000582238 73 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC083760.1-201ENST00000589621 670 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC123786.2-201ENST00000603459 275 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC107304.1-201ENST00000604229 296 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC107214.2-201ENST00000608204 634 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC114786.1-201ENST00000512892 1415 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 AC009229.4-201ENST00000623854 1947 ntBASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
TRIM39Q9HCM9 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 OR4A15-201ENST00000314706 1035 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RNU1-85P-201ENST00000364127 164 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RNU1-74P-201ENST00000384108 171 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 MIR130A-201ENST00000385274 89 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RNA5SP91-201ENST00000390902 119 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 OR6C69P-201ENST00000394268 893 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RN7SKP286-201ENST00000410894 299 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RPL21P108-201ENST00000413857 481 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AL354766.1-201ENST00000423396 542 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC113412.1-201ENST00000425840 504 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 LARP1BP3-201ENST00000437229 869 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 YWHAEP1-201ENST00000453697 763 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RPL10P17-201ENST00000453852 316 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC097493.1-201ENST00000463958 372 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 PDCL3P4-201ENST00000489621 720 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 DUTP1-201ENST00000493631 470 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC090638.1-201ENST00000498296 909 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC114981.1-201ENST00000503897 678 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 ARL2BPP4-201ENST00000506854 471 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AF213884.2-201ENST00000510417 903 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 KRT19P6-201ENST00000510983 209 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RNU6-405P-201ENST00000516637 110 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 OR5M2P-201ENST00000529003 936 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 OR6C7P-201ENST00000547875 934 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 NPM1P42-201ENST00000560329 862 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC016180.1-201ENST00000567945 403 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 EIF1P4-201ENST00000572664 335 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 MIR5186-201ENST00000577504 120 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AP003465.2-201ENST00000602571 373 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AL021997.1-201ENST00000605757 193 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 RNA5SP440-201ENST00000612665 119 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AP000756.2-201ENST00000624168 2567 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 AC239868.2-201ENST00000564237 4527 ntBASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
TRIM39Q9HCM9 SRRM1P3-201ENST00000426911 2678 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC011933.2-201ENST00000578539 2790 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms