Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 HIGD1AP8-201ENST00000453927 274 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC079168.2-201ENST00000453977 416 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC244505.3-201ENST00000454598 187 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC091685.2-201ENST00000454924 864 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 NIP7P2-201ENST00000485801 544 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC140172.1-201ENST00000502928 141 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 GCSHP4-201ENST00000538792 439 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 PCNPP1-201ENST00000552501 511 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 EDDM3DP-201ENST00000554692 434 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 MTCYBP23-201ENST00000558717 1102 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AL049539.1-201ENST00000611964 459 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC015908.5-201ENST00000623289 343 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC008993.2-201ENST00000631744 806 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 ATE1-AS1-202ENST00000636460 506 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 BX649567.1-201ENST00000642071 1134 ntBASIC4.06□□□□□ -1.76
NKX3-1Q99801 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.06□□□□□ -1.76
NKX3-1Q99801 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NKX3-1Q99801 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC100871.1-201ENST00000507871 1456 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 RPL7P27-201ENST00000403775 720 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 EIF4A1P3-201ENST00000411521 244 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 RPL37P18-201ENST00000411602 243 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 CHEK2P3-201ENST00000416118 248 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 LINC00993-201ENST00000420453 540 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AL031663.1-201ENST00000437445 219 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 MTND6P18-201ENST00000439477 513 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 OR10R1P-201ENST00000441524 1141 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 CDC42P1-201ENST00000456658 548 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 RPS3AP41-201ENST00000462701 778 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC104971.1-201ENST00000495117 578 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 TCP11X3P-202ENST00000514289 1254 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 RNU6-1028P-201ENST00000517164 93 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC034205.1-201ENST00000520621 638 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 BRD9P1-201ENST00000529855 560 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 MTND1P24-201ENST00000552175 861 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 CYP2C60P-201ENST00000566088 139 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 MTCO1P40-201ENST00000574371 625 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 BNIP3P4-201ENST00000604946 565 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC010200.2-201ENST00000605098 235 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 RNU4-5P-201ENST00000607255 135 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC007497.1-201ENST00000610421 561 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC139769.3-201ENST00000618383 175 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 AC073055.1-201ENST00000456901 1621 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.05□□□□□ -1.76
NKX3-1Q99801 SAMMSON-226ENST00000642089 1582 ntBASIC4.05□□□□□ -1.76
NKX3-1Q99801 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
NKX3-1Q99801 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms