Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 THAP12P5-201ENST00000405864 2275 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 AC097461.1-201ENST00000568928 2821 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
NUP88Q99567 AC010928.1-201ENST00000592477 1447 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 SGO1P1-201ENST00000603525 1447 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NUP88Q99567 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.72□□□□□ -1.49
NUP88Q99567 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
NUP88Q99567 SNORD116.1-201ENST00000365628 92 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NUP88Q99567 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NUP88Q99567 MIR192-201ENST00000384915 110 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AC013442.1-201ENST00000397347 228 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 MTND4P13-201ENST00000402078 1023 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 RN7SKP16-201ENST00000410180 299 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 RN7SKP100-201ENST00000411258 284 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 RNU6-575P-201ENST00000411326 105 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AC104333.2-201ENST00000422630 192 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 RPL21P43-201ENST00000425440 472 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.72□□□□□ -1.49
NUP88Q99567 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.72□□□□□ -1.49
NUP88Q99567 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.72□□□□□ -1.49
NUP88Q99567 PPIAP17-201ENST00000438507 471 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AC004980.3-201ENST00000447046 365 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 OR1H1P-201ENST00000448731 937 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AC073264.2-201ENST00000448886 166 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 MRPL35P4-201ENST00000453682 566 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC5.72□□□□□ -1.49
NUP88Q99567 RPS17P2-201ENST00000461663 408 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 RN7SL860P-201ENST00000473738 223 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 GAPDHP39-201ENST00000481866 979 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC5.72□□□□□ -1.49
NUP88Q99567 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.72□□□□□ -1.49
NUP88Q99567 RNU6-347P-201ENST00000516658 105 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 MRPS36P3-201ENST00000519284 130 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.72□□□□□ -1.49
NUP88Q99567 AC008562.1-201ENST00000521763 330 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 GSTP1P1-201ENST00000548078 319 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AL442163.2-201ENST00000553912 710 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 TVP23CP2-201ENST00000571473 623 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AL512782.1-201ENST00000603093 364 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 PSMA6P4-201ENST00000603247 718 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AL391358.1-201ENST00000605342 190 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AC092954.1-201ENST00000609121 445 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 AC019206.1-201ENST00000621938 425 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 CU459211.1-201ENST00000635667 749 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
NUP88Q99567 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 AL731532.2-201ENST00000623542 1953 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.72□□□□□ -1.49
NUP88Q99567 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
NUP88Q99567 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.72□□□□□ -1.49
NUP88Q99567 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NUP88Q99567 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.72□□□□□ -1.49
NUP88Q99567 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.71□□□□□ -1.49
NUP88Q99567 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
NUP88Q99567 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
NUP88Q99567 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
NUP88Q99567 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
NUP88Q99567 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 AL022322.2-201ENST00000624072 20397 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 HMGB1P5-201ENST00000255320 642 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NUP88Q99567 Y_RNA.465-201ENST00000384293 102 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 MIR16-1-201ENST00000385271 89 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 TMSB4XP8-201ENST00000402089 135 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 ERHP2-201ENST00000402323 299 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 CTSL3P-202ENST00000412179 788 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.71□□□□□ -1.5
NUP88Q99567 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 TMSB4XP6-201ENST00000415187 135 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.71□□□□□ -1.5
NUP88Q99567 ELOCP9-201ENST00000418624 239 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC5.71□□□□□ -1.5
NUP88Q99567 GTF2IP23-201ENST00000423746 351 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 TMSB4XP1-201ENST00000424567 135 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 NIPA2P1-201ENST00000426223 976 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 DPRXP1-201ENST00000426312 460 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC5.71□□□□□ -1.5
NUP88Q99567 RPL7P34-201ENST00000433316 712 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AC012512.1-201ENST00000446594 718 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AC000111.2-201ENST00000448200 210 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.71□□□□□ -1.5
NUP88Q99567 NECAP1P2-201ENST00000455668 727 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 DYNLL1P6-201ENST00000503440 264 ntBASIC5.71□□□□□ -1.5
NUP88Q99567 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.71□□□□□ -1.5
NUP88Q99567 AP001636.2-201ENST00000525517 696 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms