Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 SNORD3H-201ENST00000384486 214 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AC104849.1-201ENST00000462623 405 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AC022795.1-201ENST00000473808 480 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 MTND6P6-201ENST00000478031 263 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AC098799.1-201ENST00000504752 800 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AC016550.3-201ENST00000515706 767 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 MIR6868-201ENST00000611215 58 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AL645927.2-201ENST00000618350 349 ntBASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC88AQ3V6T2 AC073587.1-201ENST00000447093 876 ntBASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 TCP11X3P-202ENST00000514289 1254 ntBASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 AC093853.1-201ENST00000515689 483 ntBASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 AC008638.3-201ENST00000603341 463 ntBASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC88AQ3V6T2 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC88AQ3V6T2 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC88AQ3V6T2 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC88AQ3V6T2 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC88AQ3V6T2 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.64
CCDC88AQ3V6T2 MARK2P15-201ENST00000432204 2186 ntBASIC4.84□□□□□ -1.64
CCDC88AQ3V6T2 IL6STP1-201ENST00000346911 1020 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 NACAP7-201ENST00000407371 609 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 FABP3P2-201ENST00000453169 399 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 NPM1P47-201ENST00000560843 856 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 RNVU1-14-201ENST00000384770 164 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC092647.1-201ENST00000420654 287 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AL591503.2-201ENST00000442314 1005 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC012123.2-201ENST00000485809 248 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 UBTFL9-201ENST00000534504 1148 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC007458.1-201ENST00000542812 373 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC022968.1-201ENST00000567372 442 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 AC005344.1-201ENST00000613391 459 ntBASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC88AQ3V6T2 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 MIR128-1-201ENST00000384921 82 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 SNORA3.3-201ENST00000408712 125 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 RPL23AP89-201ENST00000439324 255 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 AC006272.2-201ENST00000594725 163 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 AC012493.2-201ENST00000595083 291 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 AL451044.1-201ENST00000604867 238 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 AC011816.2-201ENST00000607089 556 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 AC083843.3-201ENST00000623679 2186 ntBASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC88AQ3V6T2 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 SNORA48.2-201ENST00000390926 124 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 VDAC2P1-201ENST00000399358 958 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AC008481.1-201ENST00000463278 396 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 NDUFA5P2-201ENST00000519723 344 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms