Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC068831.8-201ENST00000620171 435 ntBASIC3.58□□□□□ -1.84
FOXF1Q12946 AC015722.2-201ENST00000622210 551 ntBASIC3.58□□□□□ -1.84
FOXF1Q12946 AC016717.3-201ENST00000624730 554 ntBASIC3.58□□□□□ -1.84
FOXF1Q12946 FAM35DP-201ENST00000323387 2712 ntBASIC3.58□□□□□ -1.84
FOXF1Q12946 AP002001.2-201ENST00000529025 1469 ntBASIC3.58□□□□□ -1.84
FOXF1Q12946 AC027287.1-201ENST00000553115 1453 ntBASIC3.58□□□□□ -1.84
FOXF1Q12946 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
FOXF1Q12946 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXF1Q12946 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
FOXF1Q12946 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXF1Q12946 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
FOXF1Q12946 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXF1Q12946 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXF1Q12946 PPIAP31-201ENST00000405422 495 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 ZNF603P-201ENST00000405613 487 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 JKAMPP1-201ENST00000413804 919 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXF1Q12946 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXF1Q12946 PTP4A1P1-201ENST00000420539 515 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 EIF2S2P3-201ENST00000428356 999 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXF1Q12946 NPM1P48-201ENST00000436002 853 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXF1Q12946 AC083863.1-201ENST00000438811 231 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXF1Q12946 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXF1Q12946 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.57□□□□□ -1.84
FOXF1Q12946 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC3.57□□□□□ -1.84
FOXF1Q12946 AC105918.1-201ENST00000474399 838 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 SYT14P1-201ENST00000481459 721 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 TPT1P3-201ENST00000492841 512 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXF1Q12946 AC002456.2-201ENST00000509356 380 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXF1Q12946 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXF1Q12946 YPEL5P3-201ENST00000547227 352 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.57□□□□□ -1.84
FOXF1Q12946 AL139089.1-201ENST00000620372 975 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 AC073530.2-201ENST00000623987 261 ntBASIC3.57□□□□□ -1.84
FOXF1Q12946 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXF1Q12946 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXF1Q12946 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXF1Q12946 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
FOXF1Q12946 AL450326.2-201ENST00000421913 1962 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 MTND5P23-201ENST00000430812 1655 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXF1Q12946 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXF1Q12946 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXF1Q12946 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXF1Q12946 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXF1Q12946 RNU6-233P-201ENST00000410845 141 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 Z97055.1-201ENST00000419730 712 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC013470.3-201ENST00000420252 1194 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC007064.3-201ENST00000422608 359 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 OR8F1P-201ENST00000425243 930 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 IPMKP1-201ENST00000425988 855 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXF1Q12946 AC011742.1-201ENST00000431448 434 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 HMGB1P37-201ENST00000439613 609 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXF1Q12946 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXF1Q12946 AC114982.2-201ENST00000461396 358 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 RPL23AP71-201ENST00000470966 469 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXF1Q12946 VN1R105P-201ENST00000486595 910 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 UBA52P3-201ENST00000491303 382 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXF1Q12946 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.56□□□□□ -1.84
FOXF1Q12946 RFPL4AP3-201ENST00000515267 345 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 RN7SKP21-201ENST00000516503 220 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 KCTD9P6-201ENST00000522306 950 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 OR8R1P-201ENST00000543943 764 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.56□□□□□ -1.84
FOXF1Q12946 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXF1Q12946 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXF1Q12946 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXF1Q12946 SULT1C2P2-201ENST00000562517 294 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXF1Q12946 SNX6P1-201ENST00000601728 1224 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AL606490.9-201ENST00000603331 271 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 AC010857.1-201ENST00000606398 594 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 MIR6875-201ENST00000617506 72 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXF1Q12946 AL731566.2-201ENST00000618971 317 ntBASIC3.56□□□□□ -1.84
FOXF1Q12946 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXF1Q12946 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXF1Q12946 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXF1Q12946 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
FOXF1Q12946 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXF1Q12946 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
FOXF1Q12946 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXF1Q12946 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXF1Q12946 RNA5SP479-201ENST00000364858 117 ntBASIC3.55□□□□□ -1.84
FOXF1Q12946 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXF1Q12946 AC136624.1-201ENST00000400791 413 ntBASIC3.55□□□□□ -1.84
FOXF1Q12946 RN7SKP263-201ENST00000411194 309 ntBASIC3.55□□□□□ -1.84
FOXF1Q12946 RAB9AP4-201ENST00000415230 609 ntBASIC3.55□□□□□ -1.84
FOXF1Q12946 AC092647.1-201ENST00000420654 287 ntBASIC3.55□□□□□ -1.84
FOXF1Q12946 AC087650.1-201ENST00000431445 468 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms