Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AC130365.2-201ENST00000525882 1201 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AP000620.1-201ENST00000527147 504 ntBASIC5.73□□□□□ -1.49
RNF4P78317 OR5AL2P-201ENST00000532185 920 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.73□□□□□ -1.49
RNF4P78317 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AP002373.2-201ENST00000541631 1060 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AL389895.1-201ENST00000554127 252 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AL138976.2-201ENST00000563989 694 ntBASIC5.73□□□□□ -1.49
RNF4P78317 SNORD39.3-201ENST00000584451 71 ntBASIC5.73□□□□□ -1.49
RNF4P78317 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.73□□□□□ -1.49
RNF4P78317 AC044792.1-201ENST00000593294 196 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AL009028.1-201ENST00000604895 802 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC011816.2-201ENST00000607089 556 ntBASIC5.73□□□□□ -1.49
RNF4P78317 RFPL4AP6-201ENST00000616792 846 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC006065.6-201ENST00000625201 545 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.73□□□□□ -1.49
RNF4P78317 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.73□□□□□ -1.49
RNF4P78317 USP9YP4-201ENST00000424401 1745 ntBASIC5.73□□□□□ -1.49
RNF4P78317 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.73□□□□□ -1.49
RNF4P78317 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.73□□□□□ -1.49
RNF4P78317 VPS35P1-201ENST00000563400 1518 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 CASC19-204ENST00000641001 2055 ntBASIC5.73□□□□□ -1.49
RNF4P78317 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 AC010928.1-201ENST00000592477 1447 ntBASIC5.73□□□□□ -1.49
RNF4P78317 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 AC006484.1-201ENST00000435086 1884 ntBASIC5.73□□□□□ -1.49
RNF4P78317 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
RNF4P78317 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 AP005432.1-201ENST00000580891 3485 ntBASIC5.72□□□□□ -1.49
RNF4P78317 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
RNF4P78317 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
RNF4P78317 SNORA21-201ENST00000362423 132 ntBASIC5.72□□□□□ -1.49
RNF4P78317 SNORD8-201ENST00000363915 110 ntBASIC5.72□□□□□ -1.49
RNF4P78317 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 Y_RNA.509-201ENST00000384506 99 ntBASIC5.72□□□□□ -1.49
RNF4P78317 MIR621-201ENST00000384919 96 ntBASIC5.72□□□□□ -1.49
RNF4P78317 MT-TD-201ENST00000387419 68 ntBASIC5.72□□□□□ -1.49
RNF4P78317 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 MIR1305-201ENST00000408300 86 ntBASIC5.72□□□□□ -1.49
RNF4P78317 RN7SKP266-201ENST00000410232 287 ntBASIC5.72□□□□□ -1.49
RNF4P78317 RNA5SP115-201ENST00000411160 107 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AL359704.1-201ENST00000411586 781 ntBASIC5.72□□□□□ -1.49
RNF4P78317 JKAMPP1-201ENST00000413804 919 ntBASIC5.72□□□□□ -1.49
RNF4P78317 COX6CP17-201ENST00000421389 185 ntBASIC5.72□□□□□ -1.49
RNF4P78317 SDCBPP2-201ENST00000424643 885 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC245884.2-201ENST00000426257 404 ntBASIC5.72□□□□□ -1.49
RNF4P78317 RPS27AP6-201ENST00000427962 448 ntBASIC5.72□□□□□ -1.49
RNF4P78317 PNKDP1-201ENST00000435914 430 ntBASIC5.72□□□□□ -1.49
RNF4P78317 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 AC097463.1-201ENST00000447288 481 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 PMCHL2-203ENST00000457791 237 ntBASIC5.72□□□□□ -1.49
RNF4P78317 RPS15AP17-201ENST00000470598 390 ntBASIC5.72□□□□□ -1.49
RNF4P78317 FAM172BP-201ENST00000487497 1089 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 AC006390.1-201ENST00000508068 283 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 snoU109.5-201ENST00000516231 132 ntBASIC5.72□□□□□ -1.49
RNF4P78317 RNA5SP434-201ENST00000516647 121 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 PMS2P3-207ENST00000529061 717 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.72□□□□□ -1.49
RNF4P78317 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.72□□□□□ -1.49
RNF4P78317 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 AL845331.3-202ENST00000562856 261 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC092332.1-201ENST00000563684 829 ntBASIC5.72□□□□□ -1.49
RNF4P78317 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RNF4P78317 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC5.72□□□□□ -1.49
RNF4P78317 RPL12P25-202ENST00000598100 674 ntBASIC5.72□□□□□ -1.49
RNF4P78317 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.72□□□□□ -1.49
RNF4P78317 AL391646.1-201ENST00000603860 190 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms