Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 AC041039.1-201ENST00000485656 536 ntBASIC6.23□□□□□ -1.41
LIG3P49916 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 AC026412.2-201ENST00000512270 1075 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 RNU6-202P-201ENST00000515998 96 ntBASIC6.23□□□□□ -1.41
LIG3P49916 Y_RNA.710-201ENST00000516975 110 ntBASIC6.23□□□□□ -1.41
LIG3P49916 RN7SKP35-201ENST00000517210 151 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.23□□□□□ -1.41
LIG3P49916 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.23□□□□□ -1.41
LIG3P49916 OR8Q1P-201ENST00000526467 655 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC090502.2-201ENST00000549267 280 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 ZNF322P1-201ENST00000568013 1209 ntBASIC6.23□□□□□ -1.41
LIG3P49916 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.23□□□□□ -1.41
LIG3P49916 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 MIR132-201ENST00000591554 101 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC010200.2-201ENST00000605098 235 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AL591167.1-201ENST00000607321 456 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC092681.3-201ENST00000609463 678 ntBASIC6.23□□□□□ -1.41
LIG3P49916 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.23□□□□□ -1.41
LIG3P49916 RFPL4AP6-201ENST00000616792 846 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC136475.10-201ENST00000620253 385 ntBASIC6.23□□□□□ -1.41
LIG3P49916 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.23□□□□□ -1.41
LIG3P49916 AC099654.5-201ENST00000636479 350 ntBASIC6.23□□□□□ -1.41
LIG3P49916 AC079776.5-201ENST00000641920 211 ntBASIC6.23□□□□□ -1.41
LIG3P49916 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.23□□□□□ -1.41
LIG3P49916 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.23□□□□□ -1.41
LIG3P49916 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 AC125336.1-201ENST00000508893 2827 ntBASIC6.23□□□□□ -1.41
LIG3P49916 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.23□□□□□ -1.41
LIG3P49916 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.23□□□□□ -1.41
LIG3P49916 AC096921.2-201ENST00000561507 1916 ntBASIC6.23□□□□□ -1.41
LIG3P49916 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIG3P49916 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC6.23□□□□□ -1.41
LIG3P49916 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.22□□□□□ -1.41
LIG3P49916 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.22□□□□□ -1.41
LIG3P49916 AP001029.2-203ENST00000589795 4910 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 AC005005.4-201ENST00000623789 16698 ntBASIC6.22□□□□□ -1.41
LIG3P49916 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.22□□□□□ -1.41
LIG3P49916 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.22□□□□□ -1.41
LIG3P49916 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.22□□□□□ -1.41
LIG3P49916 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
LIG3P49916 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 Y_RNA.70-201ENST00000362886 110 ntBASIC6.22□□□□□ -1.41
LIG3P49916 RNA5SP433-201ENST00000364491 114 ntBASIC6.22□□□□□ -1.41
LIG3P49916 RNU6-657P-201ENST00000383904 107 ntBASIC6.22□□□□□ -1.41
LIG3P49916 RNU6-533P-201ENST00000384144 107 ntBASIC6.22□□□□□ -1.41
LIG3P49916 MIR433-201ENST00000384837 93 ntBASIC6.22□□□□□ -1.41
LIG3P49916 RNU1-149P-201ENST00000390870 161 ntBASIC6.22□□□□□ -1.41
LIG3P49916 SNRPEP2-201ENST00000397592 279 ntBASIC6.22□□□□□ -1.41
LIG3P49916 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 TIMM9P3-201ENST00000428659 274 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AC109583.1-201ENST00000432156 268 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC6.22□□□□□ -1.41
LIG3P49916 CLUHP1-201ENST00000435012 1190 ntBASIC6.22□□□□□ -1.41
LIG3P49916 PNKDP1-201ENST00000435914 430 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AMYP1-201ENST00000440059 1023 ntBASIC6.22□□□□□ -1.41
LIG3P49916 RABEPKP1-201ENST00000440529 1026 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AL663074.2-201ENST00000440621 479 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.22□□□□□ -1.41
LIG3P49916 AC009963.3-201ENST00000458090 486 ntBASIC6.22□□□□□ -1.41
LIG3P49916 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.22□□□□□ -1.41
LIG3P49916 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC6.22□□□□□ -1.41
LIG3P49916 RNU6-488P-201ENST00000515918 99 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.22□□□□□ -1.41
LIG3P49916 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.22□□□□□ -1.41
LIG3P49916 HMGN2P47-201ENST00000559378 272 ntBASIC6.22□□□□□ -1.41
LIG3P49916 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC6.22□□□□□ -1.41
LIG3P49916 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC6.22□□□□□ -1.41
LIG3P49916 AC115085.1-201ENST00000588924 229 ntBASIC6.22□□□□□ -1.41
LIG3P49916 BNIP3P11-201ENST00000603878 563 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AC097468.3-201ENST00000607956 456 ntBASIC6.22□□□□□ -1.41
LIG3P49916 AP001437.1-201ENST00000608783 456 ntBASIC6.22□□□□□ -1.41
LIG3P49916 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.22□□□□□ -1.41
LIG3P49916 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.22□□□□□ -1.41
LIG3P49916 AC239868.2-201ENST00000564237 4527 ntBASIC6.22□□□□□ -1.41
LIG3P49916 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.22□□□□□ -1.41
LIG3P49916 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.22□□□□□ -1.41
LIG3P49916 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC6.22□□□□□ -1.41
LIG3P49916 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIG3P49916 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC6.22□□□□□ -1.41
LIG3P49916 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.21□□□□□ -1.41
LIG3P49916 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
LIG3P49916 AC079097.1-201ENST00000512187 1399 ntBASIC6.21□□□□□ -1.41
LIG3P49916 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.21□□□□□ -1.41
LIG3P49916 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
LIG3P49916 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms