Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DPY19L1P2-201ENST00000426647 915 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 AC005326.1-201ENST00000429197 123 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.72□□□□□ -1.65
BRCA1P38398 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.72□□□□□ -1.65
BRCA1P38398 AC073387.1-201ENST00000453261 709 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 RPL5P24-201ENST00000463742 885 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 AC010342.1-201ENST00000514047 877 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 AC022695.1-201ENST00000522089 237 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 CYCSP28-201ENST00000534284 321 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 AC009303.3-201ENST00000591103 736 ntBASIC4.72□□□□□ -1.65
BRCA1P38398 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.72□□□□□ -1.65
BRCA1P38398 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
BRCA1P38398 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.72□□□□□ -1.65
BRCA1P38398 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
BRCA1P38398 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.72□□□□□ -1.65
BRCA1P38398 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.65
BRCA1P38398 AL513548.1-201ENST00000562904 1724 ntBASIC4.71□□□□□ -1.65
BRCA1P38398 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
BRCA1P38398 RPL7P60-201ENST00000397636 735 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 RNA5SP120-201ENST00000410900 112 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 VDAC1P9-201ENST00000412766 841 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 CBX1P3-201ENST00000413296 527 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.71□□□□□ -1.66
BRCA1P38398 AC006511.1-201ENST00000470614 315 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 AL136126.1-201ENST00000473603 402 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.71□□□□□ -1.66
BRCA1P38398 RNA5SP164-201ENST00000516533 110 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 IGHV3-32-201ENST00000519182 355 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 MTND1P6-201ENST00000523621 946 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 OR5M7P-201ENST00000526140 972 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
BRCA1P38398 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.71□□□□□ -1.66
BRCA1P38398 AL513477.2-201ENST00000607858 568 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.71□□□□□ -1.66
BRCA1P38398 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.71□□□□□ -1.66
BRCA1P38398 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
BRCA1P38398 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
BRCA1P38398 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
BRCA1P38398 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
BRCA1P38398 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.71□□□□□ -1.66
BRCA1P38398 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
BRCA1P38398 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
BRCA1P38398 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
BRCA1P38398 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
BRCA1P38398 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
BRCA1P38398 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
BRCA1P38398 SNORD9-201ENST00000362566 104 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 AC005019.1-201ENST00000436455 431 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 AC006517.1-201ENST00000480485 328 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.71□□□□□ -1.66
BRCA1P38398 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
BRCA1P38398 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.71□□□□□ -1.66
BRCA1P38398 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.71□□□□□ -1.66
BRCA1P38398 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.71□□□□□ -1.66
BRCA1P38398 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.71□□□□□ -1.66
BRCA1P38398 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.71□□□□□ -1.66
BRCA1P38398 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
BRCA1P38398 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
BRCA1P38398 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BRCA1P38398 AL442128.2-201ENST00000620246 1824 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BRCA1P38398 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.7□□□□□ -1.66
BRCA1P38398 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
BRCA1P38398 AL672167.1-205ENST00000641112 3080 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 AC093909.5-201ENST00000621839 1799 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.7□□□□□ -1.66
BRCA1P38398 SNORA81-201ENST00000408493 178 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 PGBD4P8-201ENST00000412993 562 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 RANP8-201ENST00000444720 713 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 USP9YP2-201ENST00000504503 1000 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 USP9YP1-201ENST00000513521 1002 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 SNORA70.18-201ENST00000516696 98 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 IGKV2-38-201ENST00000517443 247 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC4.7□□□□□ -1.66
BRCA1P38398 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.7□□□□□ -1.66
BRCA1P38398 AC016839.1-201ENST00000578162 867 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC4.7□□□□□ -1.66
BRCA1P38398 AC026368.1-201ENST00000614934 690 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 AC124312.6-202ENST00000623624 418 ntBASIC4.7□□□□□ -1.66
BRCA1P38398 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
BRCA1P38398 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
BRCA1P38398 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
BRCA1P38398 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
BRCA1P38398 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
BRCA1P38398 RPS23P10-201ENST00000416185 486 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.69□□□□□ -1.66
BRCA1P38398 ATP5JP1-201ENST00000431631 322 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.69□□□□□ -1.66
BRCA1P38398 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.69□□□□□ -1.66
BRCA1P38398 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.69□□□□□ -1.66
BRCA1P38398 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.69□□□□□ -1.66
BRCA1P38398 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
BRCA1P38398 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.69□□□□□ -1.66
BRCA1P38398 TCP1P3-201ENST00000414406 1498 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 AC007823.1-201ENST00000569932 1566 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.69□□□□□ -1.66
BRCA1P38398 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
BRCA1P38398 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.69□□□□□ -1.66
BRCA1P38398 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
BRCA1P38398 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms