Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXC9P31274 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HOXC9P31274 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HOXC9P31274 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
HOXC9P31274 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
HOXC9P31274 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
HOXC9P31274 AC005005.4-201ENST00000623789 16698 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXC9P31274 RPS3AP25-201ENST00000411660 793 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 DPPA2P2-201ENST00000418220 897 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.4□□□□□ -1.54
HOXC9P31274 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXC9P31274 XKRY2-201ENST00000442362 1093 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXC9P31274 AC012158.1-204ENST00000483430 465 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 OR9N1P-202ENST00000494289 481 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 RPL29P14-201ENST00000495837 428 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXC9P31274 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC5.4□□□□□ -1.54
HOXC9P31274 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXC9P31274 RPL23AP87-202ENST00000573039 466 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXC9P31274 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXC9P31274 AL445493.3-201ENST00000619568 477 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 AC006249.1-201ENST00000621223 471 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXC9P31274 AC106858.1-201ENST00000637497 429 ntBASIC5.4□□□□□ -1.54
HOXC9P31274 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
HOXC9P31274 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
HOXC9P31274 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXC9P31274 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXC9P31274 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
HOXC9P31274 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 U8.11-201ENST00000384699 133 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 U8.12-201ENST00000384701 133 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 MIR30B-201ENST00000384850 88 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 SNORD65-201ENST00000391079 73 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AL590704.1-201ENST00000402856 794 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 PTGES3P2-201ENST00000407942 482 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXC9P31274 UBE2V1P6-201ENST00000430840 422 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AL606490.7-201ENST00000433136 191 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXC9P31274 AC007000.2-201ENST00000442564 487 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 RPL6P5-201ENST00000445678 828 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 NANOGP10-201ENST00000453325 895 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 U8.18-201ENST00000459285 133 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC092691.2-201ENST00000461787 803 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 ACTR3P3-201ENST00000480448 893 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.39□□□□□ -1.55
HOXC9P31274 AL139099.1-201ENST00000497398 403 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.39□□□□□ -1.55
HOXC9P31274 RN7SKP141-201ENST00000516167 338 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXC9P31274 NDUFA5P2-201ENST00000519723 344 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 IGLVIV-66-1-201ENST00000521832 460 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.39□□□□□ -1.55
HOXC9P31274 AC092451.2-201ENST00000538746 658 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXC9P31274 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXC9P31274 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXC9P31274 AC079148.1-201ENST00000565944 819 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXC9P31274 SLC25A36P1-201ENST00000590111 465 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC005776.1-201ENST00000603164 290 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC090246.1-201ENST00000616499 426 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC004777.1-201ENST00000624317 287 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC019080.5-201ENST00000624891 757 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 AC097372.4-201ENST00000625025 466 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
HOXC9P31274 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXC9P31274 AC106871.1-201ENST00000568324 3102 ntBASIC5.39□□□□□ -1.55
HOXC9P31274 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
HOXC9P31274 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXC9P31274 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 AL672167.2-201ENST00000377164 879 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 MIR449B-201ENST00000384995 97 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 AL450992.3-201ENST00000413192 568 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 REREP1Y-201ENST00000422655 198 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 REREP2Y-201ENST00000439103 200 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 RPL23AP89-201ENST00000439324 255 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 CABYRP1-201ENST00000465493 1045 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 AC093663.2-201ENST00000484625 313 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXC9P31274 AC016550.3-201ENST00000515706 767 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 AC019227.1-201ENST00000526902 510 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms