Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.21□□□□□ -1.73
HOXD3P31249 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 AC093671.1-201ENST00000624981 2929 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 AC005294.1-201ENST00000355509 281 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 RNU6-582P-201ENST00000362989 107 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 U8.4-201ENST00000363626 134 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 SNORA4.1-201ENST00000364263 144 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 Y_RNA.553-201ENST00000384670 102 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXD3P31249 AL645733.1-201ENST00000402250 217 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 RN7SKP125-201ENST00000410481 302 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 RNU2-6P-201ENST00000411404 190 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC068533.2-201ENST00000411872 306 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 TPMTP3-201ENST00000411928 735 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 DYNLL1P7-201ENST00000429273 258 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXD3P31249 OR52B5P-201ENST00000435337 951 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 LINC02210-201ENST00000444561 288 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC105399.1-202ENST00000447303 205 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 RPS23P9-201ENST00000448848 438 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC243772.1-201ENST00000451620 410 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 RPS21P4-201ENST00000487122 248 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 SETP14-201ENST00000497538 873 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC231760.1-201ENST00000498002 260 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 MTND6P2-201ENST00000512226 524 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC022447.1-201ENST00000515358 464 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 BLZF2P-201ENST00000553776 1130 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC007954.1-201ENST00000554198 494 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 OR11J2P-201ENST00000555298 907 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 NMNAT1P5-201ENST00000559657 841 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 AP005403.1-201ENST00000579720 229 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 RN7SL708P-201ENST00000580952 299 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC022146.1-201ENST00000595307 847 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD3P31249 U73023.1-201ENST00000603134 700 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC126915.2-201ENST00000610957 190 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 AL031667.3-201ENST00000620124 655 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 AL049536.1-201ENST00000625043 744 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 OR52B5P-202ENST00000641118 1110 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 MTND4P34-201ENST00000572715 1371 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 AC011447.7-201ENST00000624228 1590 ntBASIC4.21□□□□□ -1.74
HOXD3P31249 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD3P31249 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
HOXD3P31249 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD3P31249 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD3P31249 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD3P31249 AC103591.2-201ENST00000265259 766 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RNU6-500P-201ENST00000362349 107 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RNA5SP443-201ENST00000363083 132 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RN7SKP115-201ENST00000363177 317 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RNA5SP335-201ENST00000363817 110 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RN7SKP103-201ENST00000363848 320 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 RNU6-621P-201ENST00000364752 109 ntBASIC4.2□□□□□ -1.74
HOXD3P31249 OR52E6-202ENST00000379946 954 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms