Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC107918.3-201ENST00000533272 382 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.93□□□□□ -1.46
COL6A1P12109 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.93□□□□□ -1.46
COL6A1P12109 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 AC234778.2-201ENST00000566241 354 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC079171.1-201ENST00000568788 914 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.93□□□□□ -1.46
COL6A1P12109 MIR4420-201ENST00000583944 77 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 BNIP3P30-201ENST00000601184 574 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC125494.3-201ENST00000602759 455 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AL392112.1-201ENST00000605115 829 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 AC087241.4-201ENST00000612441 480 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AL627230.1-201ENST00000613077 211 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AL591926.8-201ENST00000616876 211 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC009704.2-201ENST00000618739 483 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AL008636.1-201ENST00000625038 1018 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 ZNF833P-201ENST00000424938 1494 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 AC093671.1-201ENST00000624981 2929 ntBASIC5.93□□□□□ -1.46
COL6A1P12109 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL6A1P12109 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.93□□□□□ -1.46
COL6A1P12109 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL6A1P12109 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A1P12109 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A1P12109 OR4F13P-202ENST00000560066 2054 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 ANKRD36BP1-202ENST00000604892 1417 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.92□□□□□ -1.46
COL6A1P12109 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.92□□□□□ -1.46
COL6A1P12109 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.92□□□□□ -1.46
COL6A1P12109 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
COL6A1P12109 AL121886.1-201ENST00000358609 435 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 SNORA62.2-201ENST00000364672 152 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 RNU6-867P-201ENST00000364956 107 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 GNG5P2-201ENST00000372054 207 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 MIR92A2-201ENST00000385299 75 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 SNORA26.8-201ENST00000391306 124 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 RPS27AP11-201ENST00000402798 447 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AL079342.2-201ENST00000403367 482 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 RPS16P5-201ENST00000406501 404 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 AL139421.1-201ENST00000423010 169 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 MRPS21P2-201ENST00000424704 264 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 RIMKLBP2-201ENST00000424737 654 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 CENPIP1-201ENST00000425713 902 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 DNAJC19P7-201ENST00000428811 344 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 HSPD1P12-201ENST00000429127 1069 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.92□□□□□ -1.46
COL6A1P12109 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 RHOT1P3-201ENST00000436571 331 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AL031663.1-201ENST00000437445 219 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 CDC27P1-201ENST00000445384 715 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AC073264.2-201ENST00000448886 166 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 RNU6-956P-201ENST00000458868 103 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.92□□□□□ -1.46
COL6A1P12109 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 MTND6P6-201ENST00000478031 263 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 GAPDHP36-201ENST00000480688 918 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AC104971.1-201ENST00000495117 578 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.92□□□□□ -1.46
COL6A1P12109 AC084024.2-201ENST00000503480 791 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A1P12109 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
COL6A1P12109 RN7SKP67-201ENST00000515905 235 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 ATP5J2P6-201ENST00000565203 266 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 AC068135.2-201ENST00000569293 1028 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 MIR5708-201ENST00000579723 85 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AP001542.2-201ENST00000593141 364 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A1P12109 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A1P12109 AC121761.2-201ENST00000617300 689 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 MIR6758-201ENST00000620653 63 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 AC099654.13-201ENST00000639774 207 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.92□□□□□ -1.46
COL6A1P12109 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A1P12109 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
COL6A1P12109 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 DNM1P47-203ENST00000571780 12667 ntBASIC5.92□□□□□ -1.46
COL6A1P12109 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A1P12109 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms