Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AP000357.1-201ENST00000409926 1165 ntBASIC4.28□□□□□ -1.72
APOEP02649 AMD1P2-201ENST00000412936 992 ntBASIC4.28□□□□□ -1.72
APOEP02649 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.28□□□□□ -1.72
APOEP02649 VN1R31P-201ENST00000417498 730 ntBASIC4.28□□□□□ -1.72
APOEP02649 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.28□□□□□ -1.72
APOEP02649 AC004975.1-201ENST00000428733 208 ntBASIC4.28□□□□□ -1.72
APOEP02649 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.28□□□□□ -1.72
APOEP02649 AC006011.1-201ENST00000442758 349 ntBASIC4.28□□□□□ -1.72
APOEP02649 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.28□□□□□ -1.72
APOEP02649 S100A11P1-201ENST00000477525 312 ntBASIC4.28□□□□□ -1.72
APOEP02649 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.28□□□□□ -1.72
APOEP02649 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.28□□□□□ -1.72
APOEP02649 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.28□□□□□ -1.72
APOEP02649 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.28□□□□□ -1.72
APOEP02649 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.28□□□□□ -1.72
APOEP02649 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.28□□□□□ -1.72
APOEP02649 AC020910.2-201ENST00000603635 610 ntBASIC4.28□□□□□ -1.72
APOEP02649 AL451044.1-201ENST00000604867 238 ntBASIC4.28□□□□□ -1.72
APOEP02649 uc_338.32-201ENST00000615087 172 ntBASIC4.28□□□□□ -1.72
APOEP02649 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.28□□□□□ -1.72
APOEP02649 AP006248.2-201ENST00000623309 592 ntBASIC4.28□□□□□ -1.72
APOEP02649 AC112484.5-201ENST00000624189 228 ntBASIC4.28□□□□□ -1.72
APOEP02649 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
APOEP02649 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
APOEP02649 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
APOEP02649 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.28□□□□□ -1.72
APOEP02649 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.28□□□□□ -1.72
APOEP02649 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
APOEP02649 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
APOEP02649 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
APOEP02649 ERCC6-202ENST00000374127 1782 ntBASIC4.27□□□□□ -1.73
APOEP02649 AL627171.1-201ENST00000618845 1308 ntBASIC4.27□□□□□ -1.73
APOEP02649 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 ZNF962P-201ENST00000443465 3140 ntBASIC4.27□□□□□ -1.73
APOEP02649 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
APOEP02649 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
APOEP02649 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
APOEP02649 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
APOEP02649 RNA5SP317-201ENST00000410176 116 ntBASIC4.27□□□□□ -1.73
APOEP02649 RNA5SP306-201ENST00000411087 107 ntBASIC4.27□□□□□ -1.73
APOEP02649 RNA5SP311-201ENST00000411290 116 ntBASIC4.27□□□□□ -1.73
APOEP02649 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.27□□□□□ -1.73
APOEP02649 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.27□□□□□ -1.73
APOEP02649 DPY19L1P2-201ENST00000426647 915 ntBASIC4.27□□□□□ -1.73
APOEP02649 YWHAEP5-201ENST00000431545 765 ntBASIC4.27□□□□□ -1.73
APOEP02649 HMGB3P10-201ENST00000434734 572 ntBASIC4.27□□□□□ -1.73
APOEP02649 AL353597.2-202ENST00000434901 373 ntBASIC4.27□□□□□ -1.73
APOEP02649 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 FABP3P2-201ENST00000453169 399 ntBASIC4.27□□□□□ -1.73
APOEP02649 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.27□□□□□ -1.73
APOEP02649 AC103987.1-201ENST00000473394 348 ntBASIC4.27□□□□□ -1.73
APOEP02649 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 AC139783.2-201ENST00000504847 1145 ntBASIC4.27□□□□□ -1.73
APOEP02649 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.27□□□□□ -1.73
APOEP02649 RNA5SP315-201ENST00000516340 116 ntBASIC4.27□□□□□ -1.73
APOEP02649 snoU109.6-201ENST00000516831 118 ntBASIC4.27□□□□□ -1.73
APOEP02649 RNA5SP312-201ENST00000517068 116 ntBASIC4.27□□□□□ -1.73
APOEP02649 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.27□□□□□ -1.73
APOEP02649 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 SNORD39.2-201ENST00000579995 76 ntBASIC4.27□□□□□ -1.73
APOEP02649 MIR5684-201ENST00000585074 65 ntBASIC4.27□□□□□ -1.73
APOEP02649 ZYXP1-201ENST00000617638 118 ntBASIC4.27□□□□□ -1.73
APOEP02649 AL359715.5-201ENST00000623431 443 ntBASIC4.27□□□□□ -1.73
APOEP02649 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
APOEP02649 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
APOEP02649 MARK2P15-201ENST00000432204 2186 ntBASIC4.27□□□□□ -1.73
APOEP02649 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
APOEP02649 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
APOEP02649 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.27□□□□□ -1.73
APOEP02649 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
APOEP02649 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
APOEP02649 AC027287.1-201ENST00000553115 1453 ntBASIC4.26□□□□□ -1.73
APOEP02649 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
APOEP02649 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
APOEP02649 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
APOEP02649 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.26□□□□□ -1.73
APOEP02649 RNA5SP130-201ENST00000364431 114 ntBASIC4.26□□□□□ -1.73
APOEP02649 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
APOEP02649 HSPE1P12-201ENST00000412576 301 ntBASIC4.26□□□□□ -1.73
APOEP02649 JKAMPP1-201ENST00000413804 919 ntBASIC4.26□□□□□ -1.73
APOEP02649 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.26□□□□□ -1.73
APOEP02649 RAB9AP5-201ENST00000437794 597 ntBASIC4.26□□□□□ -1.73
APOEP02649 PPIAP17-201ENST00000438507 471 ntBASIC4.26□□□□□ -1.73
APOEP02649 ELOCP3-201ENST00000439303 348 ntBASIC4.26□□□□□ -1.73
APOEP02649 RAB9AP2-201ENST00000443911 597 ntBASIC4.26□□□□□ -1.73
APOEP02649 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.26□□□□□ -1.73
APOEP02649 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.26□□□□□ -1.73
APOEP02649 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.26□□□□□ -1.73
APOEP02649 MORF4L1P4-201ENST00000450245 976 ntBASIC4.26□□□□□ -1.73
APOEP02649 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.26□□□□□ -1.73
APOEP02649 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.26□□□□□ -1.73
APOEP02649 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.26□□□□□ -1.73
APOEP02649 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.26□□□□□ -1.73
APOEP02649 AC093824.1-201ENST00000508796 343 ntBASIC4.26□□□□□ -1.73
APOEP02649 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms