Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SNORA74C-2-201ENST00000411179 201 ntBASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 TPT1P2-201ENST00000413105 503 ntBASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 MIR3200-201ENST00000580767 85 ntBASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AL450270.1-201ENST00000606160 391 ntBASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AC025175.1-201ENST00000606482 759 ntBASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AC119674.1-212ENST00000641155 993 ntBASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 AL359715.4-201ENST00000606629 1436 ntBASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 RNU6-666P-201ENST00000363499 107 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 RNA5SP498-201ENST00000411342 120 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 RPL36AP10-201ENST00000421785 322 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 MRPL48P1-201ENST00000445390 636 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 PTMAP3-201ENST00000447474 330 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 C1GALT1P1-201ENST00000548895 1089 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 MIR5685-201ENST00000579080 79 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 SUMO2P14-201ENST00000604488 293 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 MIR1264-201ENST00000616374 69 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC009093.8-201ENST00000641769 292 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 GHR-202ENST00000357703 4316 ntTSL 5 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 GHR-213ENST00000622294 4312 ntTSL 5 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC108032.1-201ENST00000416706 207 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 MTND2P11-201ENST00000423638 648 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC074367.1-201ENST00000438685 1125 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 RPL7P22-201ENST00000466005 733 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AL121772.2-201ENST00000614331 297 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AL645927.2-201ENST00000618350 349 ntBASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC8.13□□□□□ -1.11
SHROOM4Q9ULL8 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 RNU4-31P-201ENST00000384211 141 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 RNU6-532P-201ENST00000384318 107 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 MIR491-201ENST00000384877 84 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC002524.1-201ENST00000411687 547 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AL035551.1-201ENST00000446931 348 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC017099.1-201ENST00000448261 1028 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 DDX39BP2-208ENST00000453923 258 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC108751.2-201ENST00000469993 231 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC025768.1-201ENST00000510057 267 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC103833.1-201ENST00000517442 172 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 CD24P2-201ENST00000565486 219 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC010503.3-201ENST00000594355 540 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC005034.4-201ENST00000603612 899 ntBASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SHROOM4Q9ULL8 AC007546.2-201ENST00000623996 360 ntBASIC8.12□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms