Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
PCDH9Q9HC56 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.71□□□□□ -1.65
PCDH9Q9HC56 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.71□□□□□ -1.65
PCDH9Q9HC56 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC019155.1-201ENST00000382242 574 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL034374.1-201ENST00000406329 351 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 RN7SKP167-201ENST00000411047 285 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 EIF4A1P3-201ENST00000411521 244 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 ATG4AP1-201ENST00000416893 538 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 ELOCP13-201ENST00000443934 329 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC099063.2-201ENST00000446360 662 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 Z95152.1-201ENST00000453556 656 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC090013.1-201ENST00000485147 480 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 HPRT1P1-201ENST00000509498 657 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 RN7SKP265-201ENST00000516448 223 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC100770.1-201ENST00000532310 322 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL132857.1-201ENST00000555180 708 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL160237.3-201ENST00000604114 1013 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL049844.2-201ENST00000604280 628 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL596275.2-204ENST00000641628 552 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 AL596275.2-206ENST00000641957 626 ntBASIC4.71□□□□□ -1.66
PCDH9Q9HC56 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PCDH9Q9HC56 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 Z98745.1-201ENST00000402553 494 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AL449283.1-202ENST00000418249 604 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 NANOGP5-201ENST00000424456 877 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 OSTCP5-201ENST00000425293 453 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC000041.1-201ENST00000439655 175 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC097499.1-201ENST00000444277 208 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AL031313.1-201ENST00000448435 256 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 MTND2P8-201ENST00000450555 1025 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC068587.2-201ENST00000478386 781 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC021146.5-201ENST00000503544 545 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AP001207.2-201ENST00000519490 539 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 NPM1P6-201ENST00000521088 871 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 OR5M2P-201ENST00000529003 936 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC011611.5-201ENST00000552477 578 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AC073091.2-201ENST00000603205 907 ntBASIC4.7□□□□□ -1.66
PCDH9Q9HC56 AL357094.1-201ENST00000603845 844 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms