Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC140479.6-201ENST00000633535 357 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 OR11H5P-202ENST00000641612 1325 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC009501.3-201ENST00000605001 1352 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC096656.1-201ENST00000623826 1364 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS35Q96QK1 ASNSP1-201ENST00000518311 1939 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS35Q96QK1 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 MIR331-201ENST00000362302 94 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 RNU6-146P-201ENST00000384602 108 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS35Q96QK1 RN7SKP216-201ENST00000411050 312 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 RNU4-74P-201ENST00000411280 161 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC013404.1-201ENST00000413068 249 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC073464.3-201ENST00000422564 712 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS35Q96QK1 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 XKRY2-201ENST00000442362 1093 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 TPRKBP1-201ENST00000456243 481 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS35Q96QK1 ATP1B1P1-201ENST00000509767 915 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC093840.1-201ENST00000511599 336 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 IGLVIV-53-201ENST00000520107 367 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 IGKV2D-10-201ENST00000520194 281 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 AF230666.2-201ENST00000602328 725 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AC025175.1-201ENST00000606482 759 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL023583.1-201ENST00000607518 1143 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 AL669942.2-201ENST00000620352 697 ntBASIC4.33□□□□□ -1.72
VPS35Q96QK1 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS35Q96QK1 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS35Q96QK1 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS35Q96QK1 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS35Q96QK1 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS35Q96QK1 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS35Q96QK1 RNU6-452P-201ENST00000384406 107 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 RN7SKP167-201ENST00000411047 285 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC105402.1-201ENST00000413336 545 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 PDSS1P1-201ENST00000422953 1114 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 NPM1P24-201ENST00000428039 894 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 RPS27AP15-201ENST00000447672 466 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 PPIAP21-201ENST00000464473 501 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 SMARCE1P4-201ENST00000523647 241 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 OR5BC1P-201ENST00000529327 739 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC090515.3-201ENST00000560431 315 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 SLC25A36P1-201ENST00000590111 465 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AL139286.1-201ENST00000604465 483 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AL355802.4-201ENST00000607635 548 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AL021997.2-201ENST00000615674 271 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 AL121890.3-201ENST00000618494 516 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 FP325313.1-201ENST00000638228 703 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS35Q96QK1 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
VPS35Q96QK1 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms