Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RPL21P108-201ENST00000413857 481 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VMP1Q96GC9 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 OR4F13P-201ENST00000428478 931 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 USP9YP7-201ENST00000436723 430 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 RPL7P11-201ENST00000437586 658 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AL772161.1-201ENST00000439130 476 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 RPL23AP15-201ENST00000450202 459 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 USP9YP32-201ENST00000452432 430 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 RPS3AP41-201ENST00000462701 778 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 PTGES3P3-201ENST00000511479 482 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 Vault.1-201ENST00000516474 102 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 BRD9P1-201ENST00000529855 560 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC079148.1-201ENST00000565944 819 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 CYCSP40-201ENST00000575927 294 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC091488.1-201ENST00000604239 660 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 RMST_9.1-201ENST00000619945 193 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC006065.5-201ENST00000623427 349 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 AC132825.7-201ENST00000638744 335 ntBASIC4.62□□□□□ -1.67
VMP1Q96GC9 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VMP1Q96GC9 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.62□□□□□ -1.67
VMP1Q96GC9 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VMP1Q96GC9 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
VMP1Q96GC9 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VMP1Q96GC9 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC016716.1-201ENST00000265882 708 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VMP1Q96GC9 RN7SKP149-201ENST00000363008 344 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 RNA5SP372-201ENST00000390836 115 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC008173.1-201ENST00000418901 264 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AL450023.3-201ENST00000440592 271 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 SLC25A18P1-201ENST00000449385 454 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC233982.1-201ENST00000451247 436 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 BX276092.4-201ENST00000452056 248 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AL691482.1-201ENST00000453255 87 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC009963.2-201ENST00000453431 138 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC146507.1-201ENST00000468335 354 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 RPS6P4-201ENST00000494693 758 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 BUD31P1-201ENST00000521828 359 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC021006.3-201ENST00000530771 192 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 OR8L1P-201ENST00000534005 955 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC005868.1-201ENST00000536421 331 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 GSTP1P1-201ENST00000548078 319 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC245100.7-201ENST00000609678 442 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 AL049794.2-201ENST00000616301 365 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC140113.4-201ENST00000622087 222 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 AC099654.2-201ENST00000433031 1980 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 DDX18P5-201ENST00000534547 1306 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 CASC19-206ENST00000641028 1430 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VMP1Q96GC9 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VMP1Q96GC9 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.61□□□□□ -1.67
VMP1Q96GC9 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VMP1Q96GC9 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VMP1Q96GC9 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
VMP1Q96GC9 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VMP1Q96GC9 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VMP1Q96GC9 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.6□□□□□ -1.67
VMP1Q96GC9 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
VMP1Q96GC9 MIR525-201ENST00000384978 85 ntBASIC4.6□□□□□ -1.67
VMP1Q96GC9 MIR195-201ENST00000385194 87 ntBASIC4.6□□□□□ -1.67
VMP1Q96GC9 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VMP1Q96GC9 SNORA11B-201ENST00000408175 129 ntBASIC4.6□□□□□ -1.67
VMP1Q96GC9 RNU4-27P-201ENST00000410889 139 ntBASIC4.6□□□□□ -1.67
VMP1Q96GC9 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms