Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 AC234782.5-201ENST00000617723 324 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 BMS1P21-201ENST00000634565 365 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 RNU6-354P-201ENST00000383862 107 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 RNU6-610P-201ENST00000384264 107 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AL590762.2-201ENST00000395798 571 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 GLULP6-201ENST00000399502 913 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 DNAJC19P6-201ENST00000401853 280 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AL080315.1-201ENST00000406055 466 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 RN7SKP106-201ENST00000410832 272 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 RAB28P1-201ENST00000411517 641 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 RSU1P3-201ENST00000412878 835 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 RPL30P3-201ENST00000424262 333 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 YWHAEP5-201ENST00000431545 765 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC105402.2-201ENST00000438503 358 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC092809.1-201ENST00000441469 474 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 HMGB3P9-201ENST00000441799 583 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 HSFY3P-201ENST00000444242 1191 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 snoU13.1-201ENST00000459157 104 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 HPRT1P2-201ENST00000505250 544 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC021146.3-201ENST00000511911 260 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AL442163.2-201ENST00000553912 710 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 HMGB3P26-201ENST00000560051 582 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 HNRNPCP4-201ENST00000571636 900 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC010857.1-201ENST00000606398 594 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 MIR378J-201ENST00000611988 109 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC131238.1-201ENST00000617135 328 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 MIR7703-201ENST00000620784 77 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AC005086.4-201ENST00000623065 213 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 AP002371.2-201ENST00000624450 503 ntBASIC4.82□□□□□ -1.64
PRPF39Q86UA1 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PRPF39Q86UA1 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 MFSD8-216ENST00000641147 4009 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 OR4K15-201ENST00000305051 1216 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 IL6STP1-201ENST00000346911 1020 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 RNU1-82P-201ENST00000390851 165 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 SNORA11C-201ENST00000408532 129 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC069213.2-201ENST00000420238 366 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC241520.1-201ENST00000422654 1099 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 GXYLT1P1-201ENST00000446657 490 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AP000942.1-201ENST00000463969 747 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 RPS4XP6-201ENST00000477670 797 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC015908.1-201ENST00000478739 476 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 DEFB109F-201ENST00000491870 277 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC104629.1-201ENST00000494226 508 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 NAMPTP2-201ENST00000505629 1115 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 RNU1-6P-201ENST00000516290 144 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC209154.1-201ENST00000582156 337 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 ABI1P1-201ENST00000603375 1120 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 MIR6810-201ENST00000622701 70 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AL359757.1-201ENST00000623176 255 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms