Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HNF4AP41235 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.56□□□□□ -1.68
HNF4AP41235 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HNF4AP41235 SEC63P2-201ENST00000503863 1939 ntBASIC4.56□□□□□ -1.68
HNF4AP41235 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.56□□□□□ -1.68
HNF4AP41235 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.56□□□□□ -1.68
HNF4AP41235 AL442639.1-201ENST00000625030 1899 ntBASIC4.56□□□□□ -1.68
HNF4AP41235 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
HNF4AP41235 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.55□□□□□ -1.68
HNF4AP41235 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HNF4AP41235 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HNF4AP41235 AL136520.1-201ENST00000600311 1322 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HNF4AP41235 PTGES3P2-201ENST00000407942 482 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 PRELID3BP11-201ENST00000414230 479 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.55□□□□□ -1.68
HNF4AP41235 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.55□□□□□ -1.68
HNF4AP41235 OR5AW1P-201ENST00000426334 1006 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC073508.1-201ENST00000428866 656 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.55□□□□□ -1.68
HNF4AP41235 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.55□□□□□ -1.68
HNF4AP41235 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HNF4AP41235 AC090142.1-201ENST00000465776 462 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 RPL23AP37-201ENST00000479658 549 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 RPL21P103-201ENST00000479921 488 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.55□□□□□ -1.68
HNF4AP41235 RPL23AP73-201ENST00000492507 471 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC012170.1-201ENST00000495139 359 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 SCARNA22-201ENST00000503991 125 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.55□□□□□ -1.68
HNF4AP41235 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HNF4AP41235 AC010468.3-201ENST00000508225 458 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.55□□□□□ -1.68
HNF4AP41235 RPL7L1P13-201ENST00000511702 739 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC027338.1-201ENST00000514840 825 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 RNA5SP497-201ENST00000516081 97 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 RN7SKP276-201ENST00000516242 268 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.55□□□□□ -1.68
HNF4AP41235 AC139103.1-201ENST00000534696 1030 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.55□□□□□ -1.68
HNF4AP41235 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.55□□□□□ -1.68
HNF4AP41235 PCNPP1-201ENST00000552501 511 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.55□□□□□ -1.68
HNF4AP41235 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.55□□□□□ -1.68
HNF4AP41235 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.55□□□□□ -1.68
HNF4AP41235 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.55□□□□□ -1.68
HNF4AP41235 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.55□□□□□ -1.68
HNF4AP41235 AF230666.2-201ENST00000602328 725 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 LLPHP1-201ENST00000603571 367 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC005191.1-201ENST00000603950 358 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AL391358.1-201ENST00000605342 190 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 COX6CP4-201ENST00000605798 228 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 OR7A19P-201ENST00000608051 733 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 FAM25E-202ENST00000608562 189 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.55□□□□□ -1.68
HNF4AP41235 Mico1.1-201ENST00000611698 204 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC234782.5-201ENST00000617723 324 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC022306.3-201ENST00000619930 550 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.55□□□□□ -1.68
HNF4AP41235 AC091953.3-201ENST00000623220 236 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 AC046144.1-201ENST00000478559 1853 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HNF4AP41235 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HNF4AP41235 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HNF4AP41235 XPOTP1-201ENST00000443317 2398 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.55□□□□□ -1.68
HNF4AP41235 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.55□□□□□ -1.68
HNF4AP41235 MAPK10-303ENST00000641324 3959 ntBASIC4.55□□□□□ -1.68
HNF4AP41235 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.55□□□□□ -1.68
HNF4AP41235 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HNF4AP41235 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.54□□□□□ -1.68
HNF4AP41235 AC017007.4-201ENST00000503353 1352 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HNF4AP41235 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HNF4AP41235 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.54□□□□□ -1.68
HNF4AP41235 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HNF4AP41235 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HNF4AP41235 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HNF4AP41235 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
HNF4AP41235 OR56B2P-201ENST00000317102 954 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 RN7SKP115-201ENST00000363177 317 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 RN7SKP44-201ENST00000363602 316 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HNF4AP41235 RNA5SP113-201ENST00000410486 84 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 RNA5SP146-201ENST00000410743 123 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 AC092745.2-202ENST00000411880 369 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 AL591848.1-201ENST00000413092 322 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.54□□□□□ -1.68
HNF4AP41235 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.54□□□□□ -1.68
HNF4AP41235 AC093422.3-201ENST00000428506 305 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 ETF1P3-201ENST00000430422 1160 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 RPL37P1-201ENST00000432310 284 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 NRBF2P3-201ENST00000432731 865 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 AC073648.4-201ENST00000442655 781 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.54□□□□□ -1.68
HNF4AP41235 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.54□□□□□ -1.68
HNF4AP41235 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.54□□□□□ -1.68
HNF4AP41235 H2AFZP5-201ENST00000446960 382 ntBASIC4.54□□□□□ -1.68
HNF4AP41235 AC079168.2-201ENST00000453977 416 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms