Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA9P31269 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA9P31269 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA9P31269 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA9P31269 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA9P31269 AL606490.9-201ENST00000603331 271 ntBASIC4.36□□□□□ -1.71
HOXA9P31269 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA9P31269 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA9P31269 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA9P31269 AC019278.1-201ENST00000623516 479 ntBASIC4.36□□□□□ -1.71
HOXA9P31269 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA9P31269 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA9P31269 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
HOXA9P31269 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA9P31269 AC092435.4-201ENST00000623012 4159 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXA9P31269 PHKBP1-201ENST00000450951 1951 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HOXA9P31269 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXA9P31269 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.35□□□□□ -1.71
HOXA9P31269 RNA5SP22-201ENST00000365393 109 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 RNA5SP171-201ENST00000391071 115 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXA9P31269 AL691447.1-201ENST00000419456 387 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXA9P31269 AL451062.2-201ENST00000427515 271 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXA9P31269 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXA9P31269 AC034236.1-201ENST00000469891 373 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 AC110792.1-201ENST00000491826 472 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXA9P31269 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXA9P31269 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXA9P31269 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.35□□□□□ -1.71
HOXA9P31269 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXA9P31269 HSPE1P5-201ENST00000561489 272 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXA9P31269 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXA9P31269 AC099669.2-201ENST00000616549 437 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 MIR6075-201ENST00000620782 95 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 MIR6500-201ENST00000622700 86 ntBASIC4.35□□□□□ -1.71
HOXA9P31269 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXA9P31269 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.34□□□□□ -1.71
HOXA9P31269 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA9P31269 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
HOXA9P31269 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 HSPE1P12-201ENST00000412576 301 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 PDSS1P1-201ENST00000422953 1114 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA9P31269 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA9P31269 ABCF2P2-201ENST00000450549 296 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 IFNWP4-201ENST00000453148 294 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 AP002371.1-201ENST00000463604 433 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA9P31269 RPL23AP2-201ENST00000471227 466 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA9P31269 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA9P31269 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA9P31269 AC234775.3-201ENST00000564612 656 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 HNRNPCP4-201ENST00000571636 900 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA9P31269 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA9P31269 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA9P31269 MIR5685-201ENST00000579080 79 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA9P31269 AC008759.1-201ENST00000589783 983 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA9P31269 AC017076.1-201ENST00000607613 578 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 AL353726.1-201ENST00000614041 1000 ntBASIC4.34□□□□□ -1.71
HOXA9P31269 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA9P31269 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.34□□□□□ -1.71
HOXA9P31269 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA9P31269 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
HOXA9P31269 AC139713.2-215ENST00000641428 5037 ntBASIC4.34□□□□□ -1.72
HOXA9P31269 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HOXA9P31269 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA9P31269 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA9P31269 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA9P31269 AL049555.1-201ENST00000562834 1933 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC4.33□□□□□ -1.72
HOXA9P31269 AC006042.3-201ENST00000454684 1469 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA9P31269 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA9P31269 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
HOXA9P31269 RNA5SP105-201ENST00000391123 113 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA9P31269 LINC01881-201ENST00000416103 412 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 AL161631.1-201ENST00000417933 486 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 AC018644.1-201ENST00000429934 551 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 AC073587.1-201ENST00000447093 876 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 AL133547.1-201ENST00000448546 220 ntBASIC4.33□□□□□ -1.72
HOXA9P31269 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms