Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FGF7P5-201ENST00000441829 291 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 RPS5P7-201ENST00000456664 608 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 RPL23AP12-201ENST00000467573 473 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.64□□□□□ -1.51
SMARCA1P28370 RN7SL558P-201ENST00000497468 299 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 AP002812.4-201ENST00000532139 286 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 SNORA74C-1-201ENST00000580726 201 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 Z94722.1-201ENST00000604328 474 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 AC024940.4-201ENST00000605507 246 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.64□□□□□ -1.51
SMARCA1P28370 TUSC7.1-201ENST00000610969 165 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 AC084782.3-201ENST00000612282 578 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 AC009313.2-201ENST00000417893 1941 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC138393.1-206ENST00000540997 1886 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.63□□□□□ -1.51
SMARCA1P28370 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.63□□□□□ -1.51
SMARCA1P28370 IGKV7-3-201ENST00000357453 298 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 Y_RNA.169-201ENST00000363745 96 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 AL590084.1-201ENST00000407885 387 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC092745.2-202ENST00000411880 369 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 AL645608.4-201ENST00000423619 154 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC104837.2-201ENST00000427236 424 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC002542.1-201ENST00000440683 193 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 TCEA1P3-201ENST00000443005 880 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 EXTL2P1-201ENST00000446218 416 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AL929288.2-201ENST00000446368 407 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 ART2BP-201ENST00000453501 499 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AL354710.1-201ENST00000453641 246 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.63□□□□□ -1.51
SMARCA1P28370 GYG1P1-201ENST00000460864 698 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.63□□□□□ -1.51
SMARCA1P28370 RPL23AP37-201ENST00000479658 549 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 MTND2P14-201ENST00000482139 351 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC104687.1-201ENST00000485829 412 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC104108.1-201ENST00000509930 412 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC010486.3-201ENST00000511602 785 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.63□□□□□ -1.51
SMARCA1P28370 POLR2KP1-201ENST00000553226 168 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.63□□□□□ -1.51
SMARCA1P28370 AC068714.1-201ENST00000559623 800 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 MIR4436B2-201ENST00000581415 91 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 MIR4436B1-201ENST00000583272 91 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 BNIP3P4-201ENST00000604946 565 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC080013.6-201ENST00000606185 215 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC064807.4-201ENST00000607201 407 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC5.63□□□□□ -1.51
SMARCA1P28370 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 ZNF663P-202ENST00000641770 1131 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.63□□□□□ -1.51
SMARCA1P28370 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SMARCA1P28370 NCLP2-201ENST00000416078 1462 ntBASIC5.63□□□□□ -1.51
SMARCA1P28370 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.63□□□□□ -1.51
SMARCA1P28370 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SMARCA1P28370 AC000367.1-201ENST00000452711 1766 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC063976.2-201ENST00000425667 3556 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.62□□□□□ -1.51
SMARCA1P28370 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
SMARCA1P28370 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.62□□□□□ -1.51
SMARCA1P28370 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 RNU6-304P-201ENST00000364855 107 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms