Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
SDC1P18827 TRAV8-5-201ENST00000537369 341 ntBASIC4.03□□□□□ -1.76
SDC1P18827 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.03□□□□□ -1.76
SDC1P18827 AC063949.1-201ENST00000552900 865 ntBASIC4.03□□□□□ -1.76
SDC1P18827 AC068714.1-201ENST00000559623 800 ntBASIC4.03□□□□□ -1.76
SDC1P18827 AC090515.3-201ENST00000560431 315 ntBASIC4.03□□□□□ -1.76
SDC1P18827 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC1P18827 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC1P18827 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SDC1P18827 AC090948.1-201ENST00000607464 549 ntBASIC4.03□□□□□ -1.76
SDC1P18827 AC131238.1-201ENST00000617135 328 ntBASIC4.03□□□□□ -1.76
SDC1P18827 uc_338.9-201ENST00000617424 182 ntBASIC4.03□□□□□ -1.76
SDC1P18827 AL445493.3-201ENST00000619568 477 ntBASIC4.03□□□□□ -1.76
SDC1P18827 MIR7702-201ENST00000621931 59 ntBASIC4.03□□□□□ -1.76
SDC1P18827 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.03□□□□□ -1.76
SDC1P18827 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC1P18827 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SDC1P18827 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDC1P18827 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC1P18827 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC1P18827 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDC1P18827 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC1P18827 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
SDC1P18827 AC009313.2-201ENST00000417893 1941 ntBASIC4.03□□□□□ -1.76
SDC1P18827 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDC1P18827 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDC1P18827 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.03□□□□□ -1.76
SDC1P18827 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.77
SDC1P18827 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
SDC1P18827 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 AL512283.1-201ENST00000606756 1384 ntBASIC4.02□□□□□ -1.77
SDC1P18827 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.02□□□□□ -1.77
SDC1P18827 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 AC092079.1-201ENST00000558620 1985 ntBASIC4.02□□□□□ -1.77
SDC1P18827 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.02□□□□□ -1.77
SDC1P18827 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
SDC1P18827 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 Y_RNA.110-201ENST00000363220 99 ntBASIC4.02□□□□□ -1.77
SDC1P18827 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
SDC1P18827 RNU6-452P-201ENST00000384406 107 ntBASIC4.02□□□□□ -1.77
SDC1P18827 RNA5SP36-201ENST00000410197 133 ntBASIC4.02□□□□□ -1.77
SDC1P18827 RN7SKP235-201ENST00000410662 305 ntBASIC4.02□□□□□ -1.77
SDC1P18827 RNA5SP104-201ENST00000410989 118 ntBASIC4.02□□□□□ -1.77
SDC1P18827 NRBF2P2-201ENST00000413087 861 ntBASIC4.02□□□□□ -1.77
SDC1P18827 XKRYP4-201ENST00000414395 483 ntBASIC4.02□□□□□ -1.77
SDC1P18827 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 MTCYBP21-201ENST00000443300 1113 ntBASIC4.02□□□□□ -1.77
SDC1P18827 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.02□□□□□ -1.77
SDC1P18827 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 XKRYP5-201ENST00000449659 483 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 CYCSP53-201ENST00000455540 265 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC005229.2-201ENST00000456995 399 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.02□□□□□ -1.77
SDC1P18827 RPL7P32-201ENST00000457119 744 ntBASIC4.02□□□□□ -1.77
SDC1P18827 MTND2P28-201ENST00000457540 1044 ntBASIC4.02□□□□□ -1.77
SDC1P18827 NPM1P17-201ENST00000479221 602 ntBASIC4.02□□□□□ -1.77
SDC1P18827 RN7SL810P-201ENST00000493031 276 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC025445.1-201ENST00000502728 300 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC010627.1-201ENST00000503819 1294 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 AK3P4-201ENST00000504283 583 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AL592156.1-201ENST00000508758 304 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.02□□□□□ -1.77
SDC1P18827 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.02□□□□□ -1.77
SDC1P18827 AC063950.1-201ENST00000552036 308 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC068831.4-201ENST00000556118 109 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AL109741.3-201ENST00000561748 592 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.02□□□□□ -1.77
SDC1P18827 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.02□□□□□ -1.77
SDC1P18827 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.02□□□□□ -1.77
SDC1P18827 AC012603.1-201ENST00000606424 528 ntBASIC4.02□□□□□ -1.77
SDC1P18827 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 AC015908.5-201ENST00000623289 343 ntBASIC4.02□□□□□ -1.77
SDC1P18827 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
SDC1P18827 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 BX005019.1-201ENST00000561881 1810 ntBASIC4.02□□□□□ -1.77
SDC1P18827 AC097504.1-201ENST00000515103 2415 ntBASIC4.02□□□□□ -1.77
SDC1P18827 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SDC1P18827 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC1P18827 ZNF962P-201ENST00000443465 3140 ntBASIC4.01□□□□□ -1.77
SDC1P18827 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SDC1P18827 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
SDC1P18827 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SDC1P18827 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.01□□□□□ -1.77
SDC1P18827 AC087190.4-201ENST00000574616 8334 ntBASIC4.01□□□□□ -1.77
SDC1P18827 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms