Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 HPVC1-201ENST00000629899 1198 ntBASIC4.34□□□□□ -1.71
SDC3O75056 AC096656.1-201ENST00000623826 1364 ntBASIC4.34□□□□□ -1.71
SDC3O75056 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
SDC3O75056 CYP1D1P-201ENST00000416662 1433 ntBASIC4.34□□□□□ -1.71
SDC3O75056 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC3O75056 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC3O75056 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SDC3O75056 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SDC3O75056 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.34□□□□□ -1.72
SDC3O75056 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.33□□□□□ -1.72
SDC3O75056 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.33□□□□□ -1.72
SDC3O75056 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 AC139769.1-204ENST00000472297 1931 ntBASIC4.33□□□□□ -1.72
SDC3O75056 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
SDC3O75056 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.33□□□□□ -1.72
SDC3O75056 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.33□□□□□ -1.72
SDC3O75056 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 SPRR2C-201ENST00000290702 219 ntBASIC4.33□□□□□ -1.72
SDC3O75056 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
SDC3O75056 RPS20P14-201ENST00000412545 360 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AC013404.1-201ENST00000413068 249 ntBASIC4.33□□□□□ -1.72
SDC3O75056 RPL21P43-201ENST00000425440 472 ntBASIC4.33□□□□□ -1.72
SDC3O75056 FAR1P1-201ENST00000427163 934 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AL160175.1-201ENST00000428124 247 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.33□□□□□ -1.72
SDC3O75056 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.33□□□□□ -1.72
SDC3O75056 AC104651.2-201ENST00000447549 528 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AC107398.1-201ENST00000486904 505 ntBASIC4.33□□□□□ -1.72
SDC3O75056 PGBD4P4-201ENST00000509673 613 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.33□□□□□ -1.72
SDC3O75056 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.33□□□□□ -1.72
SDC3O75056 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.33□□□□□ -1.72
SDC3O75056 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.33□□□□□ -1.72
SDC3O75056 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.33□□□□□ -1.72
SDC3O75056 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 AC015912.2-201ENST00000571053 181 ntBASIC4.33□□□□□ -1.72
SDC3O75056 MIR548Y-201ENST00000582739 110 ntBASIC4.33□□□□□ -1.72
SDC3O75056 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.33□□□□□ -1.72
SDC3O75056 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.33□□□□□ -1.72
SDC3O75056 AL355802.4-201ENST00000607635 548 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.33□□□□□ -1.72
SDC3O75056 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.33□□□□□ -1.72
SDC3O75056 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.33□□□□□ -1.72
SDC3O75056 AL158196.1-201ENST00000616786 434 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AL356490.1-201ENST00000623079 479 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AC015726.3-201ENST00000624501 418 ntBASIC4.33□□□□□ -1.72
SDC3O75056 AC140479.6-201ENST00000633535 357 ntBASIC4.33□□□□□ -1.72
SDC3O75056 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.33□□□□□ -1.72
SDC3O75056 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
SDC3O75056 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SDC3O75056 AC093311.1-201ENST00000506586 2021 ntBASIC4.33□□□□□ -1.72
SDC3O75056 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SDC3O75056 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 SNORD115-48-201ENST00000364764 76 ntBASIC4.32□□□□□ -1.72
SDC3O75056 RNU6-185P-201ENST00000384421 107 ntBASIC4.32□□□□□ -1.72
SDC3O75056 AL583835.1-201ENST00000399570 407 ntBASIC4.32□□□□□ -1.72
SDC3O75056 ZNF965P-201ENST00000432501 817 ntBASIC4.32□□□□□ -1.72
SDC3O75056 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.32□□□□□ -1.72
SDC3O75056 AL132765.1-201ENST00000434165 553 ntBASIC4.32□□□□□ -1.72
SDC3O75056 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.32□□□□□ -1.72
SDC3O75056 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SDC3O75056 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.32□□□□□ -1.72
SDC3O75056 AC007688.1-201ENST00000475592 759 ntBASIC4.32□□□□□ -1.72
SDC3O75056 AC020890.1-201ENST00000491837 504 ntBASIC4.32□□□□□ -1.72
SDC3O75056 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.32□□□□□ -1.72
SDC3O75056 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.32□□□□□ -1.72
SDC3O75056 RNA5SP497-201ENST00000516081 97 ntBASIC4.32□□□□□ -1.72
SDC3O75056 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SDC3O75056 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.32□□□□□ -1.72
SDC3O75056 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.32□□□□□ -1.72
SDC3O75056 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 AGGF1P6-201ENST00000569213 976 ntBASIC4.32□□□□□ -1.72
SDC3O75056 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.32□□□□□ -1.72
SDC3O75056 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.32□□□□□ -1.72
SDC3O75056 AC009237.17-201ENST00000618111 748 ntBASIC4.32□□□□□ -1.72
SDC3O75056 AC116563.2-201ENST00000624751 535 ntBASIC4.32□□□□□ -1.72
SDC3O75056 RNA5SP196-201ENST00000625967 102 ntBASIC4.32□□□□□ -1.72
SDC3O75056 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 AC125257.1-201ENST00000560400 2930 ntBASIC4.32□□□□□ -1.72
SDC3O75056 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SDC3O75056 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.32□□□□□ -1.72
SDC3O75056 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SDC3O75056 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.32□□□□□ -1.72
SDC3O75056 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
SDC3O75056 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 LARP1BP1-201ENST00000506036 1359 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms