Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 AC069544.1-201ENST00000609399 999 ntBASIC19.96■□□□□ 0.79
USP29Q9HBJ7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 ZNF815P-204ENST00000434898 1737 ntBASIC19.96■□□□□ 0.79
USP29Q9HBJ7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP29Q9HBJ7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 POM121L13P-201ENST00000422362 380 ntBASIC19.95■□□□□ 0.78
USP29Q9HBJ7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 AL121906.2-201ENST00000621597 723 ntBASIC19.95■□□□□ 0.78
USP29Q9HBJ7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 AP006587.1-201ENST00000534129 1502 ntBASIC19.95■□□□□ 0.78
USP29Q9HBJ7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP29Q9HBJ7 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
USP29Q9HBJ7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 YBX1P10-201ENST00000444752 975 ntBASIC19.93■□□□□ 0.78
USP29Q9HBJ7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 AL121829.2-201ENST00000620908 328 ntBASIC19.93■□□□□ 0.78
USP29Q9HBJ7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 LINC01465-201ENST00000408887 1940 ntBASIC19.93■□□□□ 0.78
USP29Q9HBJ7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP29Q9HBJ7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP29Q9HBJ7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms