Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPAS3Q8IXF0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
NPAS3Q8IXF0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
NPAS3Q8IXF0 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPAS3Q8IXF0 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.09■□□□□ 0.81
NPAS3Q8IXF0 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 AP003041.3-201ENST00000527151 707 ntBASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.08■□□□□ 0.81
NPAS3Q8IXF0 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.08■□□□□ 0.8
NPAS3Q8IXF0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.08■□□□□ 0.8
NPAS3Q8IXF0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.08■□□□□ 0.8
NPAS3Q8IXF0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPAS3Q8IXF0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPAS3Q8IXF0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NPAS3Q8IXF0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 AC009947.2-201ENST00000444014 672 ntBASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 FAM86EP-206ENST00000510506 987 ntBASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 AL441883.1-201ENST00000566170 1045 ntBASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.07■□□□□ 0.8
NPAS3Q8IXF0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 PCED1CP-201ENST00000419887 785 ntBASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 AL359075.1-203ENST00000462729 1002 ntBASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
NPAS3Q8IXF0 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 AC140113.3-201ENST00000605663 199 ntBASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms