Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TSPY22P-201ENST00000427496 604 ntBASIC14.09□□□□□ -0.15
PRKDCP78527 GPX1P2-201ENST00000429271 606 ntBASIC14.09□□□□□ -0.15
PRKDCP78527 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.09□□□□□ -0.15
PRKDCP78527 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.09□□□□□ -0.15
PRKDCP78527 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
PRKDCP78527 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
PRKDCP78527 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PRKDCP78527 PMS2P7-201ENST00000506558 1336 ntBASIC14.09□□□□□ -0.15
PRKDCP78527 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PRKDCP78527 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
PRKDCP78527 TERC-201ENST00000602385 541 ntBASIC14.09□□□□□ -0.15
PRKDCP78527 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC14.08□□□□□ -0.15
PRKDCP78527 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.08□□□□□ -0.16
PRKDCP78527 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.08□□□□□ -0.16
PRKDCP78527 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC14.08□□□□□ -0.16
PRKDCP78527 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.08□□□□□ -0.16
PRKDCP78527 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
PRKDCP78527 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 KRT8P17-201ENST00000453110 1448 ntBASIC14.08□□□□□ -0.16
PRKDCP78527 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 TUBB8P6-201ENST00000436895 1288 ntBASIC14.08□□□□□ -0.16
PRKDCP78527 AC098831.1-202ENST00000438821 336 ntBASIC14.08□□□□□ -0.16
PRKDCP78527 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 KRT8P26-201ENST00000534154 1276 ntBASIC14.08□□□□□ -0.16
PRKDCP78527 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.08□□□□□ -0.16
PRKDCP78527 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.08□□□□□ -0.16
PRKDCP78527 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.08□□□□□ -0.16
PRKDCP78527 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
PRKDCP78527 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.08□□□□□ -0.16
PRKDCP78527 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
PRKDCP78527 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.08□□□□□ -0.16
PRKDCP78527 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC14.08□□□□□ -0.16
PRKDCP78527 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC14.08□□□□□ -0.16
PRKDCP78527 TP73-AS1-207ENST00000624167 988 ntBASIC14.08□□□□□ -0.16
PRKDCP78527 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PRKDCP78527 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
PRKDCP78527 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.07□□□□□ -0.16
PRKDCP78527 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC14.07□□□□□ -0.16
PRKDCP78527 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.07□□□□□ -0.16
PRKDCP78527 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.07□□□□□ -0.16
PRKDCP78527 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.07□□□□□ -0.16
PRKDCP78527 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.07□□□□□ -0.16
PRKDCP78527 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
PRKDCP78527 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.07□□□□□ -0.16
PRKDCP78527 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.07□□□□□ -0.16
PRKDCP78527 AC010327.4-202ENST00000591484 748 ntBASIC14.07□□□□□ -0.16
PRKDCP78527 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC14.07□□□□□ -0.16
PRKDCP78527 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
PRKDCP78527 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PRKDCP78527 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
PRKDCP78527 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.07□□□□□ -0.16
PRKDCP78527 AC064862.7-201ENST00000604520 867 ntBASIC14.07□□□□□ -0.16
PRKDCP78527 AC148477.8-201ENST00000624298 468 ntBASIC14.07□□□□□ -0.16
PRKDCP78527 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.07□□□□□ -0.16
PRKDCP78527 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC14.07□□□□□ -0.16
PRKDCP78527 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.06□□□□□ -0.16
PRKDCP78527 HLA-J-203ENST00000494367 1087 ntBASIC14.06□□□□□ -0.16
PRKDCP78527 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
PRKDCP78527 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.06□□□□□ -0.16
PRKDCP78527 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
PRKDCP78527 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC14.06□□□□□ -0.16
PRKDCP78527 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.06□□□□□ -0.16
PRKDCP78527 AP001005.1-201ENST00000571755 1248 ntBASIC14.06□□□□□ -0.16
PRKDCP78527 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
PRKDCP78527 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
PRKDCP78527 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC14.05□□□□□ -0.16
PRKDCP78527 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms