Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Sox3P53784 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.85■□□□□ 0.13
Sox3P53784 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Sox3P53784 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC15.85■□□□□ 0.13
Sox3P53784 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
Sox3P53784 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Sox3P53784 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC15.84■□□□□ 0.13
Sox3P53784 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.84■□□□□ 0.13
Sox3P53784 Gm18733-201ENSMUST00000173950 856 ntBASIC15.84■□□□□ 0.13
Sox3P53784 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Sox3P53784 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
Sox3P53784 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC15.84■□□□□ 0.13
Sox3P53784 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
Sox3P53784 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Sox3P53784 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Sox3P53784 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sox3P53784 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Sox3P53784 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Sox3P53784 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Sox3P53784 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Sox3P53784 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC15.83■□□□□ 0.12
Sox3P53784 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
Sox3P53784 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.83■□□□□ 0.12
Sox3P53784 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.83■□□□□ 0.12
Sox3P53784 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Sox3P53784 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC15.83■□□□□ 0.12
Sox3P53784 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sox3P53784 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Sox3P53784 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Sox3P53784 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.82■□□□□ 0.12
Sox3P53784 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC15.82■□□□□ 0.12
Sox3P53784 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC15.82■□□□□ 0.12
Sox3P53784 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sox3P53784 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sox3P53784 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sox3P53784 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sox3P53784 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.81■□□□□ 0.12
Sox3P53784 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Sox3P53784 Gm6623-201ENSMUST00000173570 544 ntBASIC15.81■□□□□ 0.12
Sox3P53784 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC15.81■□□□□ 0.12
Sox3P53784 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sox3P53784 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Sox3P53784 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC15.81■□□□□ 0.12
Sox3P53784 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Sox3P53784 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms