Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC42Q96M95 RNA5SP366-201ENST00000365454 123 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 NCSTNP1-201ENST00000406229 144 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 HSPE1P12-201ENST00000412576 301 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 RBMY2KP-201ENST00000418221 992 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 RPS27AP7-201ENST00000422792 455 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 HIGD1AP4-201ENST00000430194 280 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 AL138878.2-201ENST00000440581 1241 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 RN7SL303P-201ENST00000469773 251 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 AC004069.2-201ENST00000505438 1114 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC42Q96M95 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 AC024940.4-201ENST00000605507 246 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC42Q96M95 AC139713.2-214ENST00000642059 1811 ntBASIC4.27□□□□□ -1.73
CCDC42Q96M95 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC42Q96M95 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC42Q96M95 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
CCDC42Q96M95 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC42Q96M95 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 LINC00561-201ENST00000565815 2738 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 OR11H4-201ENST00000315409 1082 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 IGKV7-3-201ENST00000357453 298 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 AL590806.1-201ENST00000415818 853 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 OR5BE1P-201ENST00000425977 939 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC092809.1-201ENST00000441469 474 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC099063.2-201ENST00000446360 662 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 DNAJC19P1-201ENST00000455312 319 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 RN7SL93P-201ENST00000463035 293 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC011276.1-201ENST00000469688 323 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 S100A11P1-201ENST00000477525 312 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC108475.1-201ENST00000507880 950 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 IGHV3-32-201ENST00000519182 355 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC068446.3-201ENST00000555285 382 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 OR6R2P-201ENST00000609216 300 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 uc_338.32-201ENST00000615087 172 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 AL139089.1-201ENST00000620372 975 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 OR5BE1P-202ENST00000641168 1176 ntBASIC4.26□□□□□ -1.73
CCDC42Q96M95 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC42Q96M95 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC42Q96M95 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC42Q96M95 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC42Q96M95 RNA5SP509-201ENST00000364577 119 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC42Q96M95 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 RPL12P34-201ENST00000424532 479 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 AL732292.1-201ENST00000426692 226 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC243772.1-201ENST00000451620 410 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC010307.1-201ENST00000467206 836 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 RN7SL860P-201ENST00000473738 223 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC092045.1-201ENST00000495716 1231 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC025674.1-201ENST00000507074 324 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 MIR2114-201ENST00000516645 80 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC007424.1-203ENST00000554613 687 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 MIR4644-201ENST00000579929 84 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC015911.5-201ENST00000587076 451 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC42Q96M95 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 AL356218.2-201ENST00000605264 187 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 AL355480.1-201ENST00000629041 99 ntBASIC4.25□□□□□ -1.73
CCDC42Q96M95 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.25□□□□□ -1.73
CCDC42Q96M95 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC42Q96M95 AC006504.1-201ENST00000562493 3666 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms