Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 AC093775.1-201ENST00000624154 1868 ntBASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 AL021877.2-201ENST00000624442 10684 ntBASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 SALL4P7-201ENST00000555779 3120 ntBASIC6.81□□□□□ -1.32
NPAS3Q8IXF0 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 RNU6-874P-201ENST00000362390 105 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 RNA5SP435-201ENST00000364044 108 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 Y_RNA.339-201ENST00000365325 102 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 Y_RNA.477-201ENST00000384352 108 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 RN7SKP59-201ENST00000410520 314 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC083875.1-201ENST00000419509 405 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL590609.2-201ENST00000421430 368 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 OR10T1P-201ENST00000424327 947 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL354707.3-201ENST00000427308 331 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 OR2AS1P-201ENST00000427827 319 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 SKP1P3-201ENST00000429280 487 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 RPS29P14-201ENST00000431518 171 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC006335.2-201ENST00000437993 330 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL121871.1-201ENST00000443413 436 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC026826.1-201ENST00000493002 361 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL591767.3-201ENST00000554632 525 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC093278.2-201ENST00000564956 2485 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC004232.1-201ENST00000571388 208 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 BMS1P7-201ENST00000602440 1052 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL138895.2-201ENST00000603019 178 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AC097468.3-201ENST00000607956 456 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL121612.2-201ENST00000612261 482 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 MIR6128-201ENST00000615528 109 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 PNPT1P2-201ENST00000456768 2050 ntBASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
NPAS3Q8IXF0 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 AL034417.4-202ENST00000642135 2236 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 OR11H13P-201ENST00000359695 979 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 Y_RNA.180-201ENST00000363867 113 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 Y_RNA.301-201ENST00000364990 103 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 Y_RNA.350-201ENST00000365409 98 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 OR51A3P-201ENST00000413596 924 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 RPL21P91-201ENST00000429231 479 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 FABP5P14-201ENST00000437273 393 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 CXCR2P1-202ENST00000443392 1074 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 OR52I1-201ENST00000450052 1050 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 AC002553.2-201ENST00000453217 340 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 ELOCP24-201ENST00000456370 334 ntBASIC6.79□□□□□ -1.32
NPAS3Q8IXF0 RN7SL834P-201ENST00000461450 286 ntBASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms