Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC005242.1-201ENST00000585658 438 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 RPL12P25-202ENST00000598100 674 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC234771.5-201ENST00000600161 514 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC115286.1-201ENST00000604298 434 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AL096803.3-201ENST00000609032 532 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AP000346.3-201ENST00000622821 210 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC006065.6-201ENST00000625201 545 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 ARHGAP42P1-201ENST00000507474 1976 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
SKA3Q8IX90 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
SKA3Q8IX90 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SKA3Q8IX90 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SKA3Q8IX90 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.78
SKA3Q8IX90 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
SKA3Q8IX90 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SKA3Q8IX90 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SKA3Q8IX90 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 ZNF603P-201ENST00000405613 487 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 CYP4F29P-201ENST00000420685 446 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 CDY14P-201ENST00000431260 1014 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 FTH1P16-201ENST00000435241 552 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 CDY12P-201ENST00000440679 1015 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 CDY13P-201ENST00000445813 1015 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 CDY23P-201ENST00000451661 1014 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 DDX39BP2-208ENST00000453923 258 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 MTND2P28-201ENST00000457540 1044 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 RPL7AP52-201ENST00000458096 790 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 RN7SL738P-201ENST00000470264 297 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 RPS26P15-201ENST00000488067 348 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 IGLV3-26-201ENST00000520756 302 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC135001.1-201ENST00000544546 283 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC090515.3-201ENST00000560431 315 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AL160290.3-201ENST00000604869 165 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AL450270.1-201ENST00000606160 391 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC012409.3-201ENST00000611343 981 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 MIR6891-201ENST00000618788 93 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC020923.1-201ENST00000624021 917 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 AL356094.1-201ENST00000624663 1212 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SKA3Q8IX90 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SKA3Q8IX90 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SKA3Q8IX90 TANK-205ENST00000405852 2155 ntTSL 5 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 AC093311.1-201ENST00000506586 2021 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 OR11H5P-202ENST00000641612 1325 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.9□□□□□ -1.79
SKA3Q8IX90 HSPD1P11-201ENST00000508643 1702 ntBASIC3.9□□□□□ -1.79
SKA3Q8IX90 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SKA3Q8IX90 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AL137100.1-201ENST00000556703 1620 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SKA3Q8IX90 RNU1-130P-201ENST00000363930 160 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SKA3Q8IX90 SNORA11B-201ENST00000408175 129 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 RPS20P14-201ENST00000412545 360 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AMD1P2-201ENST00000412936 992 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC019070.1-201ENST00000415008 1024 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 TMSB10P2-201ENST00000416049 131 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC099336.2-201ENST00000422457 254 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC073464.3-201ENST00000422564 712 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 MTND2P11-201ENST00000423638 648 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 MTATP6P11-201ENST00000428071 670 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 RPL12P28-201ENST00000430852 489 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 UBE2V1P3-201ENST00000439651 417 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AL513321.1-201ENST00000441175 761 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 CEACAMP9-201ENST00000442990 513 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 HMGB1P16-201ENST00000447155 540 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 HMGB1P5-202ENST00000451497 985 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 MTND2P30-201ENST00000456663 382 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC099560.2-201ENST00000457554 255 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms