Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC116553.2-201ENST00000564203 463 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 AC122134.1-201ENST00000565664 1104 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 AC012414.6-201ENST00000568241 401 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC010487.1-201ENST00000594408 1172 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC069307.1-201ENST00000602820 447 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 U73023.1-201ENST00000603134 700 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 AC091946.2-201ENST00000606105 291 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC139769.3-201ENST00000618383 175 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP39Q53GS9 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.51□□□□□ -1.53
USP39Q53GS9 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC5.51□□□□□ -1.53
USP39Q53GS9 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
USP39Q53GS9 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP39Q53GS9 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.51□□□□□ -1.53
USP39Q53GS9 SAMM50P1-201ENST00000455403 1399 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 AC114947.2-201ENST00000565748 2125 ntBASIC5.51□□□□□ -1.53
USP39Q53GS9 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP39Q53GS9 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.51□□□□□ -1.53
USP39Q53GS9 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP39Q53GS9 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 SAMMSON-213ENST00000641336 1521 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 RNU4-21P-201ENST00000362802 126 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 U3.2-201ENST00000362981 210 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AL133388.1-201ENST00000404509 287 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 OR10T1P-201ENST00000424327 947 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 MTND3P23-201ENST00000431980 347 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AL592447.1-201ENST00000447592 540 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 RAB28P3-201ENST00000448325 597 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 CFTRP1-201ENST00000456646 183 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 RN7SL860P-201ENST00000473738 223 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 RPS7P6-201ENST00000485777 579 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 HMGB1P44-201ENST00000508597 572 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AC109471.1-201ENST00000511631 612 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 PMS2P3-207ENST00000529061 717 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 UBE2NP1-201ENST00000545592 458 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AC137627.1-201ENST00000545761 289 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 CR383656.6-201ENST00000550518 394 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 OR11J2P-201ENST00000555298 907 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 MIR4675-201ENST00000577898 77 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 SNORD39.2-201ENST00000579995 76 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AC005021.1-201ENST00000608730 355 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AL121873.1-201ENST00000616013 524 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 AL122125.1-201ENST00000616999 600 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 LINC01808-202ENST00000641680 1116 ntBASIC5.5□□□□□ -1.53
USP39Q53GS9 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.5□□□□□ -1.53
USP39Q53GS9 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
USP39Q53GS9 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP39Q53GS9 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.5□□□□□ -1.53
USP39Q53GS9 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
USP39Q53GS9 AC144833.1-201ENST00000567953 4089 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.49□□□□□ -1.53
USP39Q53GS9 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USP39Q53GS9 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
USP39Q53GS9 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms