Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ATP5JP1-201ENST00000431631 322 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 RPL21P11-201ENST00000461458 483 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 AC084198.1-201ENST00000477747 402 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL18A1P39060 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.03□□□□□ -1.6
COL18A1P39060 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL18A1P39060 SNORA62.6-201ENST00000606322 83 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 MIR7154-201ENST00000620673 73 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 AL773545.4-201ENST00000637262 310 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 AL513478.4-201ENST00000641636 310 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL18A1P39060 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL18A1P39060 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.03□□□□□ -1.6
COL18A1P39060 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.02□□□□□ -1.61
COL18A1P39060 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 ZNF833P-201ENST00000424938 1494 ntBASIC5.02□□□□□ -1.61
COL18A1P39060 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
COL18A1P39060 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL18A1P39060 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.02□□□□□ -1.61
COL18A1P39060 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.02□□□□□ -1.61
COL18A1P39060 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.02□□□□□ -1.61
COL18A1P39060 RN7SL601P-201ENST00000471221 293 ntBASIC5.02□□□□□ -1.61
COL18A1P39060 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC5.02□□□□□ -1.61
COL18A1P39060 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC5.02□□□□□ -1.61
COL18A1P39060 MIR3936-201ENST00000584304 110 ntBASIC5.02□□□□□ -1.61
COL18A1P39060 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.02□□□□□ -1.61
COL18A1P39060 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.02□□□□□ -1.61
COL18A1P39060 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.02□□□□□ -1.61
COL18A1P39060 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
COL18A1P39060 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL18A1P39060 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL18A1P39060 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC5.01□□□□□ -1.61
COL18A1P39060 AC008011.1-201ENST00000545989 227 ntBASIC5.01□□□□□ -1.61
COL18A1P39060 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.01□□□□□ -1.61
COL18A1P39060 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL18A1P39060 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.01□□□□□ -1.61
COL18A1P39060 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL18A1P39060 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL18A1P39060 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.01□□□□□ -1.61
COL18A1P39060 RPL7AP73-201ENST00000413490 353 ntBASIC5.01□□□□□ -1.61
COL18A1P39060 DBIP2-201ENST00000419076 262 ntBASIC5.01□□□□□ -1.61
COL18A1P39060 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.01□□□□□ -1.61
COL18A1P39060 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.01□□□□□ -1.61
COL18A1P39060 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC5.01□□□□□ -1.61
COL18A1P39060 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.01□□□□□ -1.61
COL18A1P39060 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
COL18A1P39060 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.01□□□□□ -1.61
COL18A1P39060 RNU1-103P-201ENST00000516502 125 ntBASIC5.01□□□□□ -1.61
COL18A1P39060 OR7E13P-201ENST00000526052 910 ntBASIC5.01□□□□□ -1.61
COL18A1P39060 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.01□□□□□ -1.61
COL18A1P39060 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.01□□□□□ -1.61
COL18A1P39060 AC026979.4-201ENST00000606555 645 ntBASIC5.01□□□□□ -1.61
COL18A1P39060 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.01□□□□□ -1.61
COL18A1P39060 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.01□□□□□ -1.61
COL18A1P39060 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
COL18A1P39060 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
COL18A1P39060 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL18A1P39060 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
COL18A1P39060 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
COL18A1P39060 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5□□□□□ -1.61
COL18A1P39060 SETP9-201ENST00000423837 832 ntBASIC5□□□□□ -1.61
COL18A1P39060 RPL21P110-201ENST00000433345 446 ntBASIC5□□□□□ -1.61
COL18A1P39060 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC5□□□□□ -1.61
COL18A1P39060 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5□□□□□ -1.61
COL18A1P39060 APOOP2-201ENST00000461561 539 ntBASIC5□□□□□ -1.61
COL18A1P39060 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5□□□□□ -1.61
COL18A1P39060 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5□□□□□ -1.61
COL18A1P39060 RANP9-201ENST00000519957 271 ntBASIC5□□□□□ -1.61
COL18A1P39060 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5□□□□□ -1.61
COL18A1P39060 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5□□□□□ -1.61
COL18A1P39060 GTF2IP8-201ENST00000560687 584 ntBASIC5□□□□□ -1.61
COL18A1P39060 AC006960.3-201ENST00000561845 705 ntBASIC5□□□□□ -1.61
COL18A1P39060 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5□□□□□ -1.61
COL18A1P39060 AC068020.1-201ENST00000594215 661 ntBASIC5□□□□□ -1.61
COL18A1P39060 AC012493.2-201ENST00000595083 291 ntBASIC5□□□□□ -1.61
COL18A1P39060 AC002069.2-201ENST00000603580 883 ntBASIC5□□□□□ -1.61
COL18A1P39060 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5□□□□□ -1.61
COL18A1P39060 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5□□□□□ -1.61
COL18A1P39060 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL18A1P39060 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL18A1P39060 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL18A1P39060 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5□□□□□ -1.61
COL18A1P39060 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
COL18A1P39060 DDX18P6-201ENST00000450119 1997 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 DPY19L1P2-201ENST00000426647 915 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 DYNLL1P7-201ENST00000429273 258 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 AC092641.1-201ENST00000440229 772 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 RNA5SP103-201ENST00000459503 118 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms