Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 OR5H15-201ENST00000383696 930 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RNU1-74P-201ENST00000384108 171 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 Y_RNA.559-201ENST00000384686 107 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RNU11-201ENST00000387069 134 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RNU6-1300P-201ENST00000391046 108 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 VDAC2P1-201ENST00000399358 958 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 AL590290.1-201ENST00000405336 380 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 PIGPP2-201ENST00000411569 458 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RPSAP35-201ENST00000413753 818 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 MTCO3P41-201ENST00000414801 328 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 OR6C64P-201ENST00000419708 825 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AL049610.1-201ENST00000423374 372 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RIMKLBP2-201ENST00000424737 654 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 FHP1-201ENST00000442741 703 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 MTCO1P19-201ENST00000443487 500 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RPL7P59-201ENST00000447700 943 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 PNPLA4P1-201ENST00000458328 305 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 RN7SL188P-201ENST00000469842 285 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RN7SL222P-201ENST00000476452 299 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RPL7AP6-201ENST00000477943 801 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RN7SL809P-201ENST00000482040 297 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 ACTG1P13-201ENST00000486987 1043 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RPS17P5-201ENST00000498293 408 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC008494.2-201ENST00000514544 370 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 AL671862.1-201ENST00000515851 349 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RNU6-885P-201ENST00000516607 104 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 Y_RNA.695-201ENST00000516715 107 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 MTCYBP20-201ENST00000524239 1129 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RFPL1S-203ENST00000539579 330 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HOXD3P31249 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.23□□□□□ -1.73
HOXD3P31249 AL360012.1-201ENST00000602813 131 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 AC133552.5-201ENST00000604266 540 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 AC000068.2-201ENST00000608816 460 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 AC018926.3-201ENST00000618841 406 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 AC004076.2-201ENST00000620532 3323 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 MUC2-202ENST00000613187 4845 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 KARSP3-201ENST00000571212 1504 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXD3P31249 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC119744.1-201ENST00000454746 1715 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms