Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
VCANP13611 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.91□□□□□ -1.78
VCANP13611 AC023509.5-201ENST00000617434 807 ntBASIC3.91□□□□□ -1.78
VCANP13611 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VCANP13611 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
VCANP13611 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.9□□□□□ -1.78
VCANP13611 ASNSP3-201ENST00000451989 1306 ntBASIC3.9□□□□□ -1.78
VCANP13611 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
VCANP13611 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
VCANP13611 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC3.9□□□□□ -1.78
VCANP13611 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
VCANP13611 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.9□□□□□ -1.78
VCANP13611 snoU109.6-201ENST00000516831 118 ntBASIC3.9□□□□□ -1.78
VCANP13611 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.9□□□□□ -1.78
VCANP13611 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
VCANP13611 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
VCANP13611 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.9□□□□□ -1.79
VCANP13611 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC3.9□□□□□ -1.79
VCANP13611 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC3.9□□□□□ -1.79
VCANP13611 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VCANP13611 RNA5SP235-201ENST00000365411 114 ntBASIC3.9□□□□□ -1.79
VCANP13611 OSTCP5-201ENST00000425293 453 ntBASIC3.9□□□□□ -1.79
VCANP13611 AF228730.2-201ENST00000438784 848 ntBASIC3.9□□□□□ -1.79
VCANP13611 VN1R25P-201ENST00000443385 738 ntBASIC3.9□□□□□ -1.79
VCANP13611 CYCSP24-201ENST00000445119 316 ntBASIC3.9□□□□□ -1.79
VCANP13611 NANOGNBP1-201ENST00000448444 480 ntBASIC3.9□□□□□ -1.79
VCANP13611 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.9□□□□□ -1.79
VCANP13611 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
VCANP13611 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VCANP13611 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
VCANP13611 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
VCANP13611 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
VCANP13611 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.89□□□□□ -1.79
VCANP13611 AC108938.1-201ENST00000451204 136 ntBASIC3.89□□□□□ -1.79
VCANP13611 AC087369.1-201ENST00000520775 996 ntBASIC3.89□□□□□ -1.79
VCANP13611 SNX6P1-201ENST00000601728 1224 ntBASIC3.89□□□□□ -1.79
VCANP13611 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.89□□□□□ -1.79
VCANP13611 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 AL451142.2-201ENST00000429076 2090 ntBASIC3.89□□□□□ -1.79
VCANP13611 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 Z97055.1-201ENST00000419730 712 ntBASIC3.89□□□□□ -1.79
VCANP13611 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.89□□□□□ -1.79
VCANP13611 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.89□□□□□ -1.79
VCANP13611 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.89□□□□□ -1.79
VCANP13611 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.89□□□□□ -1.79
VCANP13611 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
VCANP13611 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.89□□□□□ -1.79
VCANP13611 RNA5SP175-201ENST00000364275 119 ntBASIC3.89□□□□□ -1.79
VCANP13611 SNORD17-201ENST00000390930 237 ntBASIC3.89□□□□□ -1.79
VCANP13611 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC3.89□□□□□ -1.79
VCANP13611 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.89□□□□□ -1.79
VCANP13611 AC006511.1-201ENST00000470614 315 ntBASIC3.89□□□□□ -1.79
VCANP13611 AC130352.1-201ENST00000602979 661 ntBASIC3.89□□□□□ -1.79
VCANP13611 AC079684.1-201ENST00000621405 437 ntBASIC3.89□□□□□ -1.79
VCANP13611 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VCANP13611 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.89□□□□□ -1.79
VCANP13611 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.89□□□□□ -1.79
VCANP13611 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.89□□□□□ -1.79
VCANP13611 SNORA44-201ENST00000384584 132 ntBASIC3.88□□□□□ -1.79
VCANP13611 AL603825.1-201ENST00000438481 80 ntBASIC3.88□□□□□ -1.79
VCANP13611 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.88□□□□□ -1.79
VCANP13611 VN1R104P-201ENST00000505115 1009 ntBASIC3.88□□□□□ -1.79
VCANP13611 AC010149.2-201ENST00000637608 315 ntBASIC3.88□□□□□ -1.79
VCANP13611 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 AC015813.6-201ENST00000624409 5808 ntBASIC3.88□□□□□ -1.79
VCANP13611 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.88□□□□□ -1.79
VCANP13611 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
VCANP13611 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 AL078604.1-201ENST00000404609 466 ntBASIC3.88□□□□□ -1.79
VCANP13611 AC079809.1-201ENST00000415468 276 ntBASIC3.88□□□□□ -1.79
VCANP13611 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.88□□□□□ -1.79
VCANP13611 VN1R48P-201ENST00000448149 1036 ntBASIC3.88□□□□□ -1.79
VCANP13611 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.88□□□□□ -1.79
VCANP13611 OR2A20P-203ENST00000498397 1268 ntBASIC3.88□□□□□ -1.79
VCANP13611 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC3.88□□□□□ -1.79
VCANP13611 MIR4660-201ENST00000583549 74 ntBASIC3.88□□□□□ -1.79
VCANP13611 MIR422A-201ENST00000362286 90 ntBASIC3.88□□□□□ -1.79
VCANP13611 RNU4-35P-201ENST00000362588 141 ntBASIC3.88□□□□□ -1.79
VCANP13611 NMNAT1P2-201ENST00000435192 860 ntBASIC3.88□□□□□ -1.79
VCANP13611 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.88□□□□□ -1.79
VCANP13611 AL354976.1-201ENST00000613843 387 ntBASIC3.88□□□□□ -1.79
VCANP13611 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.88□□□□□ -1.79
VCANP13611 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.88□□□□□ -1.79
VCANP13611 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VCANP13611 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.88□□□□□ -1.79
VCANP13611 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC3.88□□□□□ -1.79
VCANP13611 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VCANP13611 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
VCANP13611 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
VCANP13611 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms