Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 ZNF680P1-201ENST00000436625 1469 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 TNPO1P2-201ENST00000426249 2665 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC022905.1-201ENST00000503430 3048 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 Z95327.2-201ENST00000414579 1873 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 RNU6-451P-201ENST00000362921 107 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 RNA5SP512-201ENST00000364550 120 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 Y_RNA.279-201ENST00000364763 95 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 MT-TD-201ENST00000387419 68 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 RNU6-1158P-201ENST00000391167 107 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AL353133.1-201ENST00000407695 401 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 MTCO3P12-201ENST00000416718 547 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AL929472.1-201ENST00000417484 429 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC006335.2-201ENST00000437993 330 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 CALM1P1-201ENST00000442082 433 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 GAPDHP33-201ENST00000443168 1013 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 UBBP5-201ENST00000446970 266 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 RPS3AP50-201ENST00000487064 803 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 RNU6-835P-201ENST00000516974 104 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC005519.1-201ENST00000554490 601 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC011712.1-201ENST00000588959 234 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC245052.7-201ENST00000601161 359 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 KC877982.1-201ENST00000602313 470 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC004853.1-201ENST00000604902 698 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC244100.4-201ENST00000617747 388 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC005514.1-201ENST00000623521 208 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 PABPC1P8-201ENST00000452851 2086 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 AC104162.1-201ENST00000430831 2382 ntBASIC5.12□□□□□ -1.59
CCDC140Q96MF4 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC140Q96MF4 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC140Q96MF4 RNA5SP188-201ENST00000362916 129 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms